Pscu009274.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- Mbd3
- Assembly
- GCA_958295655.1
- Location
- OY282450.1:92982058-92984018[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-26 5e-23 80.5 0.0 1 74 7 75 7 78 0.95 2 2 1.3e-06 0.0036 16.8 0.0 26 76 204 266 190 267 0.92
Sequence Information
- Coding Sequence
- ATGAATTCAAGCATTACAATTGAACGTAAACGTGTCGATTGCAATTCCCTACCAAAAGGATGGCAACGTGAAGAAGTCCTGCGAAAGTCTGGAATTTCGGCTGGTAAAGTGGACGTCTACTATTATAGTCCAACAGGCAAAAAGATTGAGAGCAAGCCACAATTAGCACGCCATCTCGGTGATGCCATTGATATAAGCACTTTTGATTTTCAAACTGGCAAAATTATACAGCATTTACCGCTGCCATCGGTTTCATTGTATCGctgcagtagtagcagcagcaacactatTATAGGCGCTCCAACGAATTCATTGTCATCTGGTGGATGCGGTGGCGGCGATAGTGgtagtggcggtggtggtggtgggtgtGGTGGTGGCACTAGTAGTAGTGGCGCAAATGTTGCTAATTCCATAACCTTGTGTTCCTCTTCATCATCCCCCTCGTATTCAAGCAACGCTTCCACCATTACAACAAGTAATGTGCTGAAACGTAAATACAAATCACAAAGCAATACGAATATCACTGGCAGCAGCAGTTGTTCCATTGGCGGCGGCGCTGGTGCCGGCTCTGCCACTTCAGCAAACCAACGTCAACATCTAGATTTCAGTCGCGCTTTGCGTACAGATGTCTCGCTAGTGCCGCCTATACGTCAGACAGCTTCTATTTTCAAACAACCCGTCACTGTGGTGCGCAACCATGagaatggcaaagtgaaacatGACACCAAAAATGCTGTCATCTGCGCACAGGAAAAACCCAAACAACTATTCTGGGAGAAACGCTTGGAATGTTTGCGCGCTTGCCATGATAGCGGAGAGGAATTCGATGATATTGTATTGCCGAAAAGTATACGCACAATTGGGCCGAATGTCAATGAACAAACCGTATTGCAATCGCTTGCCACAGCGCTGCATGTTTTGAATGTGCCCGTAACGGGACAAACATCTACAAAGACTGAAATGATTAAAAATGCTACAGCATTCATAAATCCCGAACAGCCTCTCATGCAGGCGGTGCTCGTTTCCGAAGATGACATACGCCGTCAGGAGGAACGTGTCAATGTGGCTAGAAGAAAACTGCAAGATGCACTTAAAGCTTAG
- Protein Sequence
- MNSSITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARHLGDAIDISTFDFQTGKIIQHLPLPSVSLYRCSSSSSNTIIGAPTNSLSSGGCGGGDSGSGGGGGGCGGGTSSSGANVANSITLCSSSSSPSYSSNASTITTSNVLKRKYKSQSNTNITGSSSCSIGGGAGAGSATSANQRQHLDFSRALRTDVSLVPPIRQTASIFKQPVTVVRNHENGKVKHDTKNAVICAQEKPKQLFWEKRLECLRACHDSGEEFDDIVLPKSIRTIGPNVNEQTVLQSLATALHVLNVPVTGQTSTKTEMIKNATAFINPEQPLMQAVLVSEDDIRRQEERVNVARRKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470509;
- 90% Identity
- -
- 80% Identity
- -