Basic Information

Insect: Palloptera scutellata
Gene Symbol: -
Assembly: GCA_958295655.1
Location: OY282451.1:38706594-38713695[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.78 1.2e+03 -0.8 1.3 7 24 140 159 139 160 0.79

2 5 4.5e-11 7.1e-08 32.0 0.0 1 38 575 613 575 618 0.89

3 5 1.4e-13 2.2e-10 40.0 0.0 2 39 630 667 629 670 0.94

4 5 1.7e-17 2.6e-14 52.6 0.0 1 45 684 729 684 729 0.98

5 5 3e-20 4.7e-17 61.4 0.0 1 45 736 781 736 781 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.78	1.2e+03	-0.8	1.3	7	24	140	159	139	160	0.79
2	5	4.5e-11	7.1e-08	32.0	0.0	1	38	575	613	575	618	0.89
3	5	1.4e-13	2.2e-10	40.0	0.0	2	39	630	667	629	670	0.94
4	5	1.7e-17	2.6e-14	52.6	0.0	1	45	684	729	684	729	0.98
5	5	3e-20	4.7e-17	61.4	0.0	1	45	736	781	736	781	0.97

Sequence Information

Coding Sequence: ATGTTGTTAAAGTGGGAGGCGCAGGATGAGCAGGAGGAGCAGGAGGAGCTGCTGCAGCAGTTGTTGGTGGGTCTTCTACGAACTGCAGAGCAGTTGAAAATTAAAGGTCTATGTGAGACAGCGGAAAACGCTGACGACTTGAACGACGCGGCCACAGCGACTATCACCGTTTCGGAGAATATACAACAGGCGGTTGTAGGCAATATTGTAAATGCTACTGTAGTGCCCGGTCAGATATCACCCAATACacagcagctgcagctgcagcaacaacaacaacaacaacaacagcagcagcagcaacaacaacaacagcagcagcaacaacaacaacaccagcaacagcatATTGTCGCAGCTAATGCTGCAGTATTAGCGCACGTGAACGCTAACGTGAACGCAACTAACTCACAGCAACTTGCTGCTGCAGCAGTAGCTTCCGGAGGTCAAGTTATAACAACACAAACTGCTGCTCAAACCGTTATACCAAcaatacaacagcagcagcagcagcagcagcaacaacagcagataGCACGTAAATCGCGCGTCCGCAAACGTTCCAAATCACCGGATCTGCAACAGcatcaccaacaacagcaggcacagcagcagcaacaacaacaccctCAAGCTATTctaatacaaaatcaaaatcaggcCGCCATTGTCAGTTTACAGCAAACCTCCTCCGGTAGTTATATACCCGTATCTGGTGTGCAAACCGTAACCACAAGCATTGCCGGGCAGCATCACACTGTAGTGACCACCGGTGACGAATCGGACACAGACAAGCCGATTTTGCACAAAATCTGCAAAACCGAAGCCGCCTCTGAATCGCCGGCGTCGTCATCATCCGGTTCGGGATCGAATAATGCTGGCGGTGTAACCACTGTAGCAGCACCGGGAACCGCGATCGTCACACAAATTGTAGTAGCACGCGACAGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGTGGTATCCTCGGTGTCCCAATGGGATTCTTGGATTTCGCACCAGAACCACCAGCCCCATCAGCAACACCGGTCACAGTTTCGGAGCATGTGGACTTGTCATGCAATCCCAGCACCGATACACGTGATTTATCAAATCCCACCGAACCGCTCGATATCGACAATCACCTGGCTCAGCATATGATTCAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACAGGTGATGAAAGCAATTCAAATTTGGTGCAGCACATCAAAAGTGAAGTGATTGAGgcgaaacaacagcaacagcagcagcagcaacaacagcagcagcagcaacaacatcaacagcagcagcagcagcatcatcaatcACAACAACACCAATTACATGCTCAGCAAATAGCGCAAGGACAATCTCAGCAACATCAGCAGGTGCACCAGCAACAAGCACATCTGCAACttgcacagcaacaacagcaaacgcaTCAGGAAATCTCTGGTGCAACAGTTATGGAGATTGACCCGAGCCAAATAAAACACGAACCGGGCATGATAATAACGCCAGAGATTGTGAATATGATGACAACTGGGCATATGGATATGTATAATTCTGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCACCGAACGATCAAAATGAGCCACATTACACCAATTTGGACCAACAACATGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCGTCTGTAACATATGGCATCCCTTCGACCACACTATGGCAGCGTGCTCATCGCATGGGCATCGAAACGCCAAAGAAGGAAGGCGGCACAAAATCATGGAATGAGGATTCTCTCAATAATGCCTTGGAAGCATTGCGCTCTGGTCAAATATCAGCGAATAAGGCATCGAAAGCCTTTGGCATACCATCATCGACGTTGTATAAGATTGCAAGACGTGAAGGTATACGTTTGGCAGCGCCCTTCAATGCCGCACCCACAACATGGACACCAGAAGATTTGGAGCGTGCATTGGAGGCAATTCGCGCTGGTCATACTTCCGTCCAGAAAGCAAGTGCTGAATTTGGTATACCGACAGGAACACTTTATGGCCGTTGCAAACGTGAGGGCATCGAATTATCGCGCTCGAATCCGACTCCATGGTCTGAGGATGCAATGAATGAAGCTTTGAATTCCGTACGAGTCGGCCAAATGTCCATAAATCAAGCGGCTATACACTACAATCTGCCCTACAGTTCTTTATACGGACGCTTCAAACGTGGCAAATATGACGTGTCCAATGTTAGTGGCACTTCGATTAATAATACATCGGGGAACACATCCGGCAGCATTGAAATTATTGAGCACAGCCAAGAAAATTCGTTGCACATGTTTCAACAGCAGTTCCAGTATAGTCCATCGCCGCAGCAGCACAGCACTCCGCTGCACTCACAAACACCGCAACATCTCCAGCAGCATGTTGTCCATAttcagcagcagccgcagcagcaacatcaacagcaacatgtcccacaacagcaacaacatatccAGCAGCAAGATGTTGTAACATCGAGCAGCCAGGTGGCACACACGAGCGCTGCcggccagcaacaacaacaacagcagcagcaacagcagcagcaacaacaaatccaACAGATTTATCATCATCATAGCACACCAGAGAGAAGTTGA
Protein Sequence: MLLKWEAQDEQEEQEELLQQLLVGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVPGQISPNTQQLQLQQQQQQQQQQQQQQQQQQQQQQQHQQQHIVAANAAVLAHVNANVNATNSQQLAAAAVASGGQVITTQTAAQTVIPTIQQQQQQQQQQQQIARKSRVRKRSKSPDLQQHHQQQQAQQQQQQHPQAILIQNQNQAAIVSLQQTSSGSYIPVSGVQTVTTSIAGQHHTVVTTGDESDTDKPILHKICKTEAASESPASSSSGSGSNNAGGVTTVAAPGTAIVTQIVVARDSKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVSEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIEAKQQQQQQQQQQQQQQQHQQQQQQHHQSQQHQLHAQQIAQGQSQQHQQVHQQQAHLQLAQQQQQTHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNVSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPQQHSTPLHSQTPQHLQQHVVHIQQQPQQQHQQQHVPQQQQHIQQQDVVTSSSQVAHTSAAGQQQQQQQQQQQQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: iTF_01470425;
80% Identity: -