Pven019465.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- egg
- Assembly
- GCA_012654025.1
- Location
- CM022875.1:26876747-26888217[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 7.5e+03 -3.2 0.1 14 22 34 41 32 43 0.79 2 2 1.6e-10 8.2e-07 28.7 0.0 29 75 288 332 266 334 0.82
Sequence Information
- Coding Sequence
- ATGagagatttcaaattaaatGACAGTATAGAAGAAAATTATGGAAAACTCACCCGAAGACTATTAACCACAGCAGGTAGAATAAAGGCAAAAAATGGAGGATGGCAGAGAAAACTCAGTCGAAgcacattaaatttattaagaaaaaggagaaaacaaaagaagaaacatAGCATGTGTAAGCGCGAATGTGTAGAACTATGCAAATTAATTAGGAGAAAGGCAGAAGAAGATATAGAAAGATACAACCTGGAAAGTCTGAAAAAAGTTATAGAAGAGAATAAAAGTTTAAGGAAAATCAAAGGAGAGTTAATGATGGGAAGATCACATTTTGTGTCACTCAGGAATAAAGAAGATAAATGGATAAATGCTGAAGTTCTTGAAATTGACTGCTCTTTGGCTAAAATGCGATTTAGTGATAAAGATGATGATTGTGATTGGGTTTTCCGAGGATCGGATCGGTTGCGACCTTTGTACGAAAGTAAAGTGAATGCCGCTCGAAGATGTATGGAACTTGAAAAGAATAATTCTAGAAGAAATATCACCACTGAAAATTTTGTTGTCCCAATTGATAGACCAAAAGTTCAAACTGCACGTAAGAGTTTATCTGGGAAGAATCGACCACGAGTTTATTTTGAAAGTGGTGACAAGAAACTTACTTGGAATCCTGTTAAAGTTCCGGGTAAAATTGTGTATAGGAATATTGAAAATGTTACCCGAGGAAAAAAATACGAGCAACATACATGCAGTCGACAATGCGTGAATTggattcaattcaattttgatgTGATGATTAAGAAGATCCCGCTGTTAGCAATTCCACTTTACACCGGATGTGAAAGgattGTAGCGTATTACAAAGGCCGGAAAGTAATCTTTTATTCAATGCCATGTGGTCGAAAAATTCGATCGAGTGCTGAACTTGGTGAATACCTTCGGCACACCAGATCTAAATGGACAGTTGATATGTTTGAATTCGATACATTTGTGGATGTCTTGCGAGAGTTTGTTATTGATAGTGCGAACATCACAATTAAAgAATATATTGGCTATCAAAATAAAAGACTTCCAGATCACGTGGTGTCGGGAATTTATGAATGCAATCGACGTTGCAGTTGCTCAAGGTCATGTTACAACAGAGTGGTGCAGTTCCCACTGGTCCAGAAACTTCAACTGTTTAAAACTGAAATGAAAGGTTGGGGATTGCGATGTCTCACTGACATTCCACAAGGATCTTTCATTTGTATTTACGCCGGACATTTGCTCACTGATAATGACGCAAATGAGGAGGGAAAAAACTACGGCGATGAATATCTGGCCGAACTAGATTTTATTGAATGTATTGAAAGAACCAAAGAAGGATACGAATCAGATGTTCCCGAGGATAGTGATAGCAGCAATGAAGGTACAACGAGTGGAACTCTCGACGAGAACTCGATGGACAGTGATGTTCAGGGGATCTTAAACTCAGAAGATGAGAATGACACCGAACACGTTGGTCCCCGACttagaaagagaaagaaaaataaagatggCGAAAGGAAGACTTCAAGTTTAATGATGACGCTGAATGCTAAAaagaagcaaaataataaaaagcctGAAATCAGGAAGTCACTTCGAGAATATTTTGGTGAAAATGAAAACcatTCTTGCAGCCCTaatgtttttgttcaaaatgtaTTTGTAGACACACATGATCCCAGATTTCCTTGGGTGTCTTTCTTTGCGTTGAAATACATTGAAGCTGGTACCGAACTGACATGGGATTATGCTTATGACATTGGAAGTGTTCCTGGCAAAGTTGTGTACTGTTATTGCGGATCACCCGAGTGTCGTCATCGATTATTGTAA
- Protein Sequence
- MRDFKLNDSIEENYGKLTRRLLTTAGRIKAKNGGWQRKLSRSTLNLLRKRRKQKKKHSMCKRECVELCKLIRRKAEEDIERYNLESLKKVIEENKSLRKIKGELMMGRSHFVSLRNKEDKWINAEVLEIDCSLAKMRFSDKDDDCDWVFRGSDRLRPLYESKVNAARRCMELEKNNSRRNITTENFVVPIDRPKVQTARKSLSGKNRPRVYFESGDKKLTWNPVKVPGKIVYRNIENVTRGKKYEQHTCSRQCVNWIQFNFDVMIKKIPLLAIPLYTGCERIVAYYKGRKVIFYSMPCGRKIRSSAELGEYLRHTRSKWTVDMFEFDTFVDVLREFVIDSANITIKEYIGYQNKRLPDHVVSGIYECNRRCSCSRSCYNRVVQFPLVQKLQLFKTEMKGWGLRCLTDIPQGSFICIYAGHLLTDNDANEEGKNYGDEYLAELDFIECIERTKEGYESDVPEDSDSSNEGTTSGTLDENSMDSDVQGILNSEDENDTEHVGPRLRKRKKNKDGERKTSSLMMTLNAKKKQNNKKPEIRKSLREYFGENENHSCSPNVFVQNVFVDTHDPRFPWVSFFALKYIEAGTELTWDYAYDIGSVPGKVVYCYCGSPECRHRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -