Pven018328.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_012654025.1
- Location
- CM022875.1:1803192-1805811[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-13 2e-09 37.4 2.3 165 223 4 72 1 137 0.74
Sequence Information
- Coding Sequence
- ATGTTCAGGTATAAAACTCAATTAGAAGAGCGAGATCGACTGATAGAGGAGAACGGTCTTGTGATCGTGGGCGGCGAACAATCCTCTACCAGCAGTGATAGTGGGGCCGAAGACAGCTCACTCACCATTACCAATTGTAAACAGCCAAAAAGAGCACTTGTATCTTCACAAACTGCTCAATTACTTAATCTTAGTGGGGAAGGGTCTTTAGCCCCTTTTTGGACATCCATTATGAAGTCTCCAAATTTTAGAGGAGGCCTCGACAATCTTGATGATCTTCTCAGCGGAGTTGCCCGACTTGAGAGTCAAGTGATAAGGTACAAATCCGCGGCAGAGACATCCGAGAAGGTGGAAGACGAGCTGAAGGTGGAAAGGCGAAAAATACAGAGAGAGGTAAGTGGACTTGATTCCTTTGTTCTGTACCAGATCACGTACTGA
- Protein Sequence
- MFRYKTQLEERDRLIEENGLVIVGGEQSSTSSDSGAEDSSLTITNCKQPKRALVSSQTAQLLNLSGEGSLAPFWTSIMKSPNFRGGLDNLDDLLSGVARLESQVIRYKSAAETSEKVEDELKVERRKIQREVSGLDSFVLYQITY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -