Pven018326.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- lrrfip2
- Assembly
- GCA_012654025.1
- Location
- CM022875.1:1794094-1799572[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-18 1.3e-14 54.4 16.2 1 41 3 43 3 45 0.96 2 2 7.5e-26 5.2e-22 78.7 12.9 92 165 43 118 41 127 0.83
Sequence Information
- Coding Sequence
- ATGTACGCGGAAGCGCGTTTGGCAGCAAGAAGACAAGCGCGAGCTGAAGCGCGTGAAATACGACTTCGAGAAATAGAAAGACAACAGAAAGAAGCTGAGGAAAATGCTGATCGGGCGTTTGATGTTATGTCCGAACTTGAAGAGAAGTTCCGGAAAGCTATGGTACAAAACGCACAACTAGACAATGAAAAATGTACGGCCAATTATGAAGTAGAACTGCTCAAGGATAGATTTGAAGAACTGGAGGAGAGTCACTCACAATTGAACAAAGATCATAAAGACAAATGTAGAGAACTAGATCTGAACAAAGATCATAAAGACAGATGTAGAAAGCTAAAACAATTGAAGCGAGTCAGTAGTAAAGTTCAGGAAGATTTAGCATGGTGA
- Protein Sequence
- MYAEARLAARRQARAEAREIRLREIERQQKEAEENADRAFDVMSELEEKFRKAMVQNAQLDNEKCTANYEVELLKDRFEELEESHSQLNKDHKDKCRELDLNKDHKDRCRKLKQLKRVSSKVQEDLAW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -