Pven007327.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- TFIP11
- Assembly
- GCA_012654025.1
- Location
- CM022880.1:29346359-29359589[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-86 1.2e-82 277.9 19.5 1 275 399 669 399 669 0.97 2 2 0.29 3e+03 -2.3 0.0 247 268 686 707 674 718 0.45
Sequence Information
- Coding Sequence
- ATGTCTGATAACGAGTTTGAACGTTTTGAAATCACAGACTACGATCTGGACAATGAGTTTAATACAAATAGACCCAGAAAGAAAAtgtccaaaaatcaaatgatttatGGTATGTGGGCAGACAACAGTGATGACGATGATGGCGACGATTCGGCACGTCCTTCATTTAGTAagaaaaaaccaaaaaactatacagcccCTGTTAATTTTATCTCTGGTGGAGTGCAGCAAGCTGGGAAAAAGAaagatcaaaaaattaaaaataatgaaaacaaaaatgaagatgatgatgaggAGGAAGAAGAGGACGCCACAAGTGGACAAAGAGTTCAAGACTCTAGCGACGAAGAGGATCTACGGCCTtcgtttggaaaaaaaagttctcaAATGATTGATGGAGAAATAGCTGGACTTCGAAAAAAATCCCAACAGTATGTCAATTCAACGCTAGTTAACAAAGGTGTTGGTGACTGGGAAAAACATACCAAAGGAATTGGTGCCAAACTGCTACTTCAGATGGGATTTCAACCAGGTAAAGGTTTAGGAaaatcattacaaggtatttcagCTCCCATTGAAGCCAAATTACGGAAAGGTCGAGGTGCTATTGGAGCATATGGTCCAGAAACAAAACCAAAAGTTGCAGAAATAAAAGACGGTAGAAGTAAAATTGATAAATCGAAAAAGGAAACTGTGAAAGTATCTCATTGGAGAAAAGATAACAAGGAGAGTCAGAAGTCAAAAGTTGAGTATGTGTACAGAAGCATTGAAGATGTGATAGAGGACAGCAAGCAAGTCACCAAGAAGCAGCAACCCGTCTATAATGAATTAGCCAAAGTAAAAGTAATCGATATGACTGGTCCCGAGCAGAGAGTACTATCTGGGTACCATGCAATCTGTGGGGTTCAAAGGCCATCAGAACAATGGGAGTTTCGAAAGGATaagaaattttctaattttgccGTTCCCGAGTTAttacataatattaatttaattgtagATATGTGTGAACAGAACATTATTGATACGGACAGGAAACTCCAATATATTGACAATAGAAACGTTCACATTGAACAAGAAGTTAACAAACTAGAAACACTCTGTGTTCAAGAAAAGGAAACGATTGATCAATTGACCAATATTCTCTCCATCATTGACAAGCTCAGCCAATCTAGCCAGGATAAAAGTTTGACTTTAGATGAAACCGCAAAAACATTCAAGTTACTCAAGGAAAAACATTTGTCTGAATATTGTATGTACGATCTATCATCTTTGGCCGTATCACTACTTCGACCAATATTCAAAGATATTCTCTCGGCTTGGAATCCACTTGAAGACGCTAAAAAACCAATCCCTTTATTtgaagaatggaaaaatattctcaaaataGAACAAGTGCATTCTTTATCGACGATATCCTCAACTGATCCTTATCAAAGAATAGTTTGGGATGCACTTATGCCATGTTTCAGGATTGCAGCAAGtACTTGGAATTGCAAGAAAATGTGTGAACCCATGCTACGTCTTTTGGAAGCCTGGAAACCAATTTTACCAACATGGATGATGGCAAATATTTTGCAACAAGAAATTCTACCAAAGATTAGTTTAGAAGTAGAGGAGTGGAATCCATTGACTGATACGGTACCCATACATTCGTGGGTATTACCTTGGGTTCCTTTATTAGGCCATCACTTCAGTACGGTCATTTATCCAACTATAAGACACAAATTAAGTGCAGCATTGCTCAACTGGCACCCGTCGGACTATTCAGCGCGTCTTCTAATTCTACCTTGGTCTAATGTGTTCAGCAAAGGAGAAATGgatggtttcctttttcaaaatattgtacCCAAACTGCATATCGCTTTACAAGAATTTGTCATCAACCCTCAGCAGCAACACTTAGACAACTGGAATTGGGTAATGGAGTGGACTGAACTTCTCTCTAGTCAAACCATAGCAAGTATTTTGAGTACTTCATTTTTTCCAAAGTGGCTTCAAGTGCTTTCTATGTGGCTTAATCTGAGTCCAAACTATGACCAAGTAGCGAACTGGTATCAAGGATGGAAATCTCTTTTCACTGAAAACCTTCTTCAGGAGCCTGTAATTAAGGAGCATTTTAGATCAGCTCTTGATATGATGAGTCGCTCTGTAGGGGGAGACACGCCACCCCCGCCCCCTCCTCCACCAACTCTACCAAGCAAAGAATCATCAAGCAGAACATCTGGTTATGCAGAATCCGTGTCCGCTACCAAATCTGTACCACAAGGATTTAGAGATTTGGTTCAGAAGAGTTGTGAAGAGAGAGGAATATTATTTATGCCAATTCCGAATAGATTTCGAGAAGGCAAACCAATTTACAAATGTGGTGGTGTACAAATTTATATTGATAGAAGTGTAATTTTTGTCAGTTCACAAAATGGACCATGGGTACCAAAATCTTTGAGTGATACTCTGAAATTGGCCGCTACATAA
- Protein Sequence
- MSDNEFERFEITDYDLDNEFNTNRPRKKMSKNQMIYGMWADNSDDDDGDDSARPSFSKKKPKNYTAPVNFISGGVQQAGKKKDQKIKNNENKNEDDDEEEEEDATSGQRVQDSSDEEDLRPSFGKKSSQMIDGEIAGLRKKSQQYVNSTLVNKGVGDWEKHTKGIGAKLLLQMGFQPGKGLGKSLQGISAPIEAKLRKGRGAIGAYGPETKPKVAEIKDGRSKIDKSKKETVKVSHWRKDNKESQKSKVEYVYRSIEDVIEDSKQVTKKQQPVYNELAKVKVIDMTGPEQRVLSGYHAICGVQRPSEQWEFRKDKKFSNFAVPELLHNINLIVDMCEQNIIDTDRKLQYIDNRNVHIEQEVNKLETLCVQEKETIDQLTNILSIIDKLSQSSQDKSLTLDETAKTFKLLKEKHLSEYCMYDLSSLAVSLLRPIFKDILSAWNPLEDAKKPIPLFEEWKNILKIEQVHSLSTISSTDPYQRIVWDALMPCFRIAASTWNCKKMCEPMLRLLEAWKPILPTWMMANILQQEILPKISLEVEEWNPLTDTVPIHSWVLPWVPLLGHHFSTVIYPTIRHKLSAALLNWHPSDYSARLLILPWSNVFSKGEMDGFLFQNIVPKLHIALQEFVINPQQQHLDNWNWVMEWTELLSSQTIASILSTSFFPKWLQVLSMWLNLSPNYDQVANWYQGWKSLFTENLLQEPVIKEHFRSALDMMSRSVGGDTPPPPPPPPTLPSKESSSRTSGYAESVSATKSVPQGFRDLVQKSCEERGILFMPIPNRFREGKPIYKCGGVQIYIDRSVIFVSSQNGPWVPKSLSDTLKLAAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -