Plon058769.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- -
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000015.1:20790549-20794092[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-17 1.5e-13 52.5 0.0 1 42 165 207 165 210 0.95
Sequence Information
- Coding Sequence
- ATGATGGTATCGTCAGTGCAGCAACTCCAAGGCATGTTGGCTTTTCTAGACCATTTGGGCTGGCTACCTATTGATTCAGGATTTCAATGGACTTTGGAGCACGTAGTGTGTCCCAGAATATCACTGTCTGGGGCTTCCTCCCACGCCTTCTCAGCTCACCACCACCACTTACCTCCGGCATTTGACTCCAACCCATCGGGTTCCATCTCTTCCTCTGCCTCTTCTTCCAATCCAGTCTCATCTCACATCTCTACATATCCCAACCCAGCATTTCCCCGGATCAAGTCGGGAGGGATCGGAAACAATGGTAGTGGTGGGGGTCGGGGACTGGGTGGTGGTTCATCCTTCACACACCATTATGCTCCTCATTACTACCATCATTCTCACTCTTCAAACAGTCCTGTGGCTCTGTCTTCCCAGGTGTCCCCCAATTCCAATCAGAATTTAGCTCTGACTGGTACTACAGTCCGTCGTAAAAGAACTAATACACAgactgatgaaaattttctaagtgCTTTGGAAGCTGTCCGTACTGGAGGGGTAGGATTTTGCAAGGCAGCAAGAATGTATGGTGTGAACAATAGGACATTGTGGCTGGAGTACAAGAAGAGGGGGTATCCAATTACACGTCCTAGTGTTAAGGCCCGAACAGCTGAGTTCGTATTACCAAATCCACCACCACCCCCTCCTCCCCCACCCACCTCATCACCACTTCACGGGTCAGACAGAACGCAAACTGTTTCCACTCACCCAAGCTGCTCATCAGCTGTAATGTGCTCTGGTGAAGGGACTGGAGGAAGAGGAGGGGGTTCTGGtgatggtggtggtggtggagctgggggaggaggagggggaggaGGTGGAGATGGTACAGGAGGTAGTGGAGGGAATGCAGGGGTGGAATCCAGAGGGAGAGAGGAGCAAGGGCAGATGAACTACATTAATCCAGTGGTACCTGTTCCTCACCATTTAAGTCCTAGGGGTTTTGAACAAAGGACTAATTTGGATGCAATGGAAAACCAGGCGAGAAGGTTTCCAACTGGTGGAAATGTTGAATCTATGTTCATAGGGTAG
- Protein Sequence
- MMVSSVQQLQGMLAFLDHLGWLPIDSGFQWTLEHVVCPRISLSGASSHAFSAHHHHLPPAFDSNPSGSISSSASSSNPVSSHISTYPNPAFPRIKSGGIGNNGSGGGRGLGGGSSFTHHYAPHYYHHSHSSNSPVALSSQVSPNSNQNLALTGTTVRRKRTNTQTDENFLSALEAVRTGGVGFCKAARMYGVNNRTLWLEYKKRGYPITRPSVKARTAEFVLPNPPPPPPPPPTSSPLHGSDRTQTVSTHPSCSSAVMCSGEGTGGRGGGSGDGGGGGAGGGGGGGGGDGTGGSGGNAGVESRGREEQGQMNYINPVVPVPHHLSPRGFEQRTNLDAMENQARRFPTGGNVESMFIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01504597; iTF_01212602; iTF_00306850; iTF_00797170; iTF_01286296; iTF_00261248;
- 90% Identity
- -
- 80% Identity
- -