Plon037993.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- bab2
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000009.1:29876920-29893248[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-11 8.8e-07 30.8 0.0 2 39 479 517 478 521 0.91 2 4 1.4e-09 1.6e-05 26.7 0.0 1 38 536 573 536 579 0.89 3 4 9.2e-16 1e-11 46.6 0.0 3 44 593 634 591 635 0.95 4 4 2.7e-18 3e-14 54.7 0.0 1 40 642 682 642 686 0.92
Sequence Information
- Coding Sequence
- ATGGCAAGCCAACATTACTGTTTGCGGTGGAATAACTACCAGTCGAACATGACATCGGTATTTCATCAACTTCTGCAAGATGAAGCTTTCGTTGATGTGACTTTAGCATGCAATGAGGCATCGTTAAAAGCACATAAGGTTGTACTTTCGGCGTGCTCCCCATTTTTTCAGAAGTTATTATTGGAAAATCCCTGTAAACATCCCGTTATCATAATGCCCCAAGATGTATGCTACAGTGATcttaaattcataatagaatTCGTCTATAAAGGTGAAATTGACGTGTCTCAAGCGGAACTACAGTCTCTCCTAAAGACAGCAGACCAGCTGAAAATTAAAGGTCTTTGTGAAGTTTCTGACAAGAATGCAGGCGGATCGGACGGTGTTACTTCTCTTCCAATATCTCGCCGTTCATTCACCAAACTTCGCTTATCTGGATACAAGCGACGATGCGTCGACCAGGCAAGGAGGGCCATCTTCCCCGATCATCACCGCCACCACCACCAGGGTGGTCACGGAATGGGAATGGGCATGAGAAGACGTTCTCTAGACACGGAGCGGGGGCACGGCGCCGCTGGCTTACCACCGCCTGGGGCTCCTCCAGGTCCCGTCGGCGGCGAATACGGCAAGACGGGAGACACCCAAAACCAACAGCAACCGCAACAGCATGGATCTGTTGGAGTGCCATCGAACGGTACCGGAGGAGCCACCGGTGGTGCAGAAGGTGCGCCGTGTTGTCCGGAAGGTGCCCAAGGAGAGAACAAGGGTGCCGCGACAACCAGTGGCCCGGAAGGTGGGGACGGGGCTGCGGAAGGGGTGACGGCGGGTGTGGGTCCGTCACAGAGCACGGGAGAGGGTGGGGAGATCCCGAGACACCCTGTTGAGAAGCAGGAGCCGGGAGTGGTGGTGAAGGAAGGACATGAGATGGTAGGCAGTGGGGAAAGACCGCCCCCGCCGCCCCCCGGTCAACCCCAGCAAGGAGGAAGGATGGAGGAGTTGGAGATTTACCCATGCTCCCCAGCTGATAGGATGCAAGGCCCACGTCCTGAGCACACCAATTATCCACGCAGACACAGTGATGAGGTGAAGGTGAAGCTGGAACTAAGGGCTATTGAGCCCGATGCTGTCATAGATATTGACAGTCACATGTCTGAAAGGAATGTTGATGATGAGCACACAATGATGATCACTCCAGAACTTCTAGGTCTAATACCATCTTCATCTGGACACTCTGATGGCAGTGAGGTCTCCGGCACCCCTGGGGGTGGAGCAGCCAGTGGAGGCGGAAGCAATAACAGCACCATTGGAGGAGGTGGGGTGGGAGGGGGCGGAGGAGGGGGAGGCGGTGGAGGTGGAGGTGGTGGAGGCGGTGGTGGGGGTGGGGGAGGAGGCATTGTAATCAAGGGTGGACCCGGAGGCCCCAAGAACTGGAACCATGAAGACATGGAAATGGCCCTTGATGCACTGCGTACGCATGCCATGAGCCTAACCAGAGCATCTGCCACTTTTGGAATCCCGTCCACCACCCTCTGGCAGCGAGCTCATCGTCTTGGAATTGACACTCCGAAGAAGGATGGtggaggccctcccggagggaaGTCATGGTCAGAGGATGATTTGACCACCGCCCTTGATGAGCTGAGGGCAGGTCGTATTTCAGCAAACCGTGCTGCCAAGGTTTACCGTATTCCAAGCAGTACTTTATACAAGATAGCAAGAAAAGAAGGGATCAAGCTCTCTGCTCCATTCAACGCCACACCCACCACCTGGTCATCAGAGGATCTAAACAGAGCCTTGGAAGCTATCCGTCAGGGCGTTTCAGTGCAGAGGGCATCTTCAGAGCACGGCATACCTAGTGGAACTCTCTATGGAAGGTGCAAGCGAGAGGGGATAGAGCTGTCTAAGAGCAACCCCGTTCCATGGTCCGAGGACGACATGAACGAGGCACTGGAGGCTGTTAGAGTGGGTGAGATGAGTATCAACCAAGCCGCAATTCATTATAACCTTCCATACTCCTCCCTGTACGGCCGATTCAAAAGGATTCGATTCGAGGCTGAGGGAGGTGGTGTGGAGAGTGGGTCAACGCAAGGTCCTCAAGGTCCAGGCAGTGGCAGTGGGATAATGCTGACACCAAGTGGCGGTGGGCATGAAGGCATCGACTTTGAGATGTACAGCAGCTGA
- Protein Sequence
- MASQHYCLRWNNYQSNMTSVFHQLLQDEAFVDVTLACNEASLKAHKVVLSACSPFFQKLLLENPCKHPVIIMPQDVCYSDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVSDKNAGGSDGVTSLPISRRSFTKLRLSGYKRRCVDQARRAIFPDHHRHHHQGGHGMGMGMRRRSLDTERGHGAAGLPPPGAPPGPVGGEYGKTGDTQNQQQPQQHGSVGVPSNGTGGATGGAEGAPCCPEGAQGENKGAATTSGPEGGDGAAEGVTAGVGPSQSTGEGGEIPRHPVEKQEPGVVVKEGHEMVGSGERPPPPPPGQPQQGGRMEELEIYPCSPADRMQGPRPEHTNYPRRHSDEVKVKLELRAIEPDAVIDIDSHMSERNVDDEHTMMITPELLGLIPSSSGHSDGSEVSGTPGGGAASGGGSNNSTIGGGGVGGGGGGGGGGGGGGGGGGGGGGGGIVIKGGPGGPKNWNHEDMEMALDALRTHAMSLTRASATFGIPSTTLWQRAHRLGIDTPKKDGGGPPGGKSWSEDDLTTALDELRAGRISANRAAKVYRIPSSTLYKIARKEGIKLSAPFNATPTTWSSEDLNRALEAIRQGVSVQRASSEHGIPSGTLYGRCKREGIELSKSNPVPWSEDDMNEALEAVRVGEMSINQAAIHYNLPYSSLYGRFKRIRFEAEGGGVESGSTQGPQGPGSGSGIMLTPSGGGHEGIDFEMYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131658; iTF_01384543; iTF_01384997; iTF_00306848; iTF_00307048;
- 90% Identity
- iTF_01131658;
- 80% Identity
- iTF_01131658;