Psmy005724.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
RXR
Assembly
GCA_030142225.1
Location
JARQST010000310.1:988056-990424[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-44 9.4e-41 140.7 0.0 203 405 107 305 56 308 0.88

Sequence Information

Coding Sequence
ATGACGTATAGTCATCGTTATAAAAGttgcGAAGGATGCAAGGGATTCTTCAAACGCACAGTACGGAAGGACCTGTCGTATGCATGCCGGGAAGAGAAATCGTGTATAATCGACAAGAGGCAAAGGAATCGCTGTCAATATTGTCGGTATCAAAAATGCCTGGCGATGGGTATGAAGAGGGAAGCCGTTCAGGAGGAGCGACAGAGAACCAAGGAACGTGACCAGAGCGAAGTCGAGAGCACCAGTAGTTTGCACGCGGATATGCCAGTTGAGAGAATTTTAGAAGCGGAAAAgagagtagagtgtaaaacGGAGCACCAGGGAAACTACGAGaatgaaGTGTCAAATATTTGCAACGCCACAAACGCACAGCTGTTCCAGCTGGTCGAGTGGGCTAAGCATATCCCTCACTTCACGTCTCTTCCACTGGAGGATCAAGTCCTGCTGCTCAGGGCGGGATGGAACGAGCTTCTGATAGCAGCCTTCTCCCATCGCTCAATAGACGTGAAGGACGGGATCGTCCTGGCAGCTGGTATCACCGTCCACAGGAGTTCAGCCCACCAGGCAGGCGTCGGTACGATATTCGACCGGGTGTTGTCGGAGCTGGTGCCGAAGATGCGGGAGATGAAGATGGACAAGACCGAGCTTGGTTGTCTAAGGTCGATCATACTCTTCAATCCGGAAGTACGTGGTCTCAAGTCTGCCCAAGAAGTTGAACTTCTACGGGACAAGGTGTACGCCGCCCTGGAGGAGTACACCCGCGTCGCCAGGCCCGAAGAACCAGGACGCTTCGCCAAGCTTCTTCTACGCTTACCGTCGCTACGCTCTATCGGTTTGAAATGCCTGGAGCatctatttttcttcagaTTAATAGGGAACGTACCCATCGACGCTTTCCTTATGGAAATGTTAGAATCTCTCTCGGATCCTTAG
Protein Sequence
MTYSHRYKSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPVERILEAEKRVECKTEHQGNYENEVSNICNATNAQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSIDVKDGIVLAAGITVHRSSAHQAGVGTIFDRVLSELVPKMREMKMDKTELGCLRSIILFNPEVRGLKSAQEVELLRDKVYAALEEYTRVARPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFFRLIGNVPIDAFLMEMLESLSDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01130892; iTF_01130841; iTF_01130846; iTF_00894818; iTF_00894822; iTF_00894895; iTF_00894833; iTF_01268354; iTF_01268299; iTF_01268302; iTF_01268313; iTF_01271298; iTF_01271240; iTF_01271244; iTF_01271253; iTF_01372770; iTF_01372778; iTF_01373076; iTF_01372766; iTF_01447618; iTF_01447626; iTF_01447643; iTF_01447614; iTF_01102083; iTF_01102155; iTF_01101357; iTF_01102079; iTF_01255587; iTF_01255756; iTF_01255574; iTF_01255576; iTF_00738438; iTF_00738377; iTF_00738380; iTF_00738391; iTF_00980231; iTF_00980145; iTF_00980148; iTF_01449671; iTF_01449685; iTF_01449659; iTF_01449663; iTF_01497450; iTF_01497455; iTF_01497523; iTF_01497466; iTF_01393551; iTF_01392802; iTF_00880485; iTF_01213354; iTF_01213357; iTF_01213389; iTF_00880558; iTF_01389456; iTF_01393554; iTF_01213363; iTF_01389459; iTF_01389529; iTF_01393625; iTF_00880474; iTF_00880477; iTF_01392861; iTF_01392799; iTF_00126754; iTF_00128226; iTF_00125957; iTF_00128229; iTF_00125959; iTF_00127559; iTF_00129768; iTF_00126057; iTF_00127498; iTF_00129002; iTF_00129771; iTF_00129005; iTF_00129840; iTF_00128241; iTF_00125971; iTF_00126740; iTF_00126742; iTF_00126806; iTF_00128310; iTF_00129078; iTF_00129783; iTF_00129016; iTF_00127483; iTF_00127486; iTF_00451975; iTF_00687201; iTF_01273124; iTF_00721287; iTF_01273127; iTF_01273160; iTF_00687210; iTF_00721291; iTF_00721325; iTF_01273138; iTF_00721302; iTF_00687256; iTF_00451962; iTF_00451966; iTF_00687198; iTF_00452000; iTF_00849864; iTF_00849939; iTF_00849849; iTF_00849853; iTF_01100617; iTF_01102823; iTF_01102827; iTF_01100622; iTF_01101361; iTF_01102898; iTF_01100697; iTF_01101434; iTF_00380307; iTF_00380310; iTF_00380384;
90% Identity
iTF_00880485;
80% Identity
iTF_01130892; iTF_01130841; iTF_01130846;