Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: Hr39
Assembly: GCA_030142225.1
Location: JARQST010000572.1:210546-214029[+]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.1 5.4e+03 -3.4 11.4 63 164 207 318 178 363 0.55

2 4 7.3e-08 0.00037 20.2 0.0 1 21 516 536 516 540 0.92

3 4 0.98 4.9e+03 -3.3 0.0 90 113 571 598 553 607 0.56

4 4 1.2e-69 6.1e-66 223.7 0.0 202 408 698 899 672 899 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.1	5.4e+03	-3.4	11.4	63	164	207	318	178	363	0.55
2	4	7.3e-08	0.00037	20.2	0.0	1	21	516	536	516	540	0.92
3	4	0.98	4.9e+03	-3.3	0.0	90	113	571	598	553	607	0.56
4	4	1.2e-69	6.1e-66	223.7	0.0	202	408	698	899	672	899	0.95

Sequence Information

Coding Sequence: ATGTCGGAGCAAAACGGGCCCACGGAGGGCCCGGGCCCGGGCTGGTGGCCTCCGGCACAGTCCTGGAAGTCATCCTCGTTGGGCGCACGCACCGAGGCTGGGAAGAACGTTTCCGTCACTACGATTAACGTACCACCGGCCCATGAGATGCATGACGGTAAGAGCGTCTGCAAGTATCTGGGAGGACAGAATGGCGTGACGGTTTCGGTAGTGTCCAGCTGCGGATCAGCTTCCGCTCCTGGGTCTAGTAATGTCGTCGGTACCGGGAGCGCTGGCGAGTCCGGTTCCGTGGACGACGTTGAGGACAGTGACGGTGAGGTGAGCAAGATAGACTTCCGGGGTGTTAATCTGCgcacgaaaaagaaacgagatgCTTCCGGCGGACAAGAAAGTGAAAACAGTGCGATCGGCACTGATAATATTCAGCAGCAACCCGAAAGGCCAATGTCTTGGGAGGGTGAACTCTCGGACCAAGAAATGTCTTCCAATACTATCACGAACCAGGACCACGAGGAAACGTTTATGGAGGGTGTACAAGTGTGCAGTGCGAGTCCCGGACCACAGGAACAAAAGTTCCCAATAAAACCGGAGCCGGACTTTAGGTCAAGTCCAGGACTCGCTCTGGGCTCCCTTAATGAGACGGCCTTGCCGCTTACTCACGCCCAGCAactgcagcagcagcaacagcaacaacagcaacagcagcagcaacaacgtGGTCTGGACGGTCTTGAACAGACACAACAGAGCGACCTACCCTTGCTGGTTGGCAAACTCCTAGGGGGTTATAATAGTTCAACCCCGAATCACAGTCCTGTACTAAATCCCCGGCATCATCTTACTAAGCACAGTCATACCCGGTCTCAGGTCCCCTCGCCGGATTCGGCGATTCACTCGGCCTATAGTGTCTTCAGCTCTCCCACGCAGAGTCCTCACGCGGCACGGCACTCTGCACTAGGTGCTGGCAGTCCTGTACCATCTTCATCGCTGTCACTTTCACGACACAGTTTTAATAATTCCACGTCTTCGttatctttatctctctcgcactctctaTCGAGGAACAACTCGGACGCTTCCAGTAGCTGTTATAGCTACGGATCCCTTAGTCCACCGACACACTCGCCCGTCCAGCAACCGAGGCATTCCCATCCGCAACAGCATCATCAAGTCACTCAGGGCAGTCCTTTGCATCTACCCGCAGCCTCCGGTGCCACTCATCATTATTCCACCCCGGGATCAGAACTCTCGGAGGGCCTCGCAGAGGACCAGGAAGACTGTAGGATAGCGCCGGCGCCCTCGGGCATCTCCACAAGGCAGCAACTTATAAATAGTCCATGTCCTATATGTGGCGATAAGATCAGCGGCTTTCATTACGGTATATTCTCCTGCGAATCCTGTAAGGGATTCTTCAAGAGGACCGTACAGAATCGTAAGAATTATGTGTGCCTACGTGGTGCGGGATGTCCCGTGACTGTCGCTACTAGAAAGAAGTGTCCAGCCTGCCGATTCGACAAGTGCCTGAATATGGGAATGAAGTTGGAGGCGATAAGGGAGGATAGGACTAGGGGTGGTCGTAGTACCTATCAGTGTACCTATACTCTACCTGCTAACCTTATCGGCGGGCCTACCGGTGGCATTTCCGGTGATAAAATCACCGGTGGTACCTGTAGTCCAGCACCGCCAGGATCAGAGCATCATCACTCAATGAGACATCATTCAAATCATTCGCACAAGCTACAAGTGGTGCCGCAGCTCCTGCAGGACATCATGGACGTGGAACATCTCTGGCATTACAACGACAATGATCGTGTAACTAGTGGCCAGGGTAGTGGTATCAGTGGTGGTAACGGTAGTGGTAGCGCtagtggtggcggtggtggtggtagcgTTAGTGGTGTCAGTGGTAGTGCTAGTGGCGGTGGAAATTCATCCGGAGGCGGGAGTTCATCCGCCGTCGGAAGTAACGGGAACATACCTAGAGGAGAATCCTCGAGACCAAGTTCCGCGGGTCCTCCATCCTCTAATCACGAACAACACTCACCACCAGCGAGTACCCCCAGCTCGAATTCCACCCCCAATCCCAATGGAAATCCCACGCAGCATCCGGACTTTCTTTCTAATCTGTGTAACATCGCCGATCATAGACTCTACAAGATCGTCAAGTGGTGCAAGAGTCTGCCGCTCTTCAAGAACATCTCCATAGACGATCAGATATGCCTTCTTATCAACTCCTGGTGCGAACTCCTCCTATTCTCCTGCTGCTTTCGCAGTATGAGTACGCCTGGTGAGATCAGGGTGTCCCTTGGCAAGTCGATAACTCTCGAACAGGCGAGACAGCTAGGTCTTGCGACGTGTATCGAGAGGATGTTGGCCTTTACAAATAACCTTAGACGACTCAGGGTGGATCAGTACGAGTACGTAGCGATGAAGGTGATAGTCTTGCTAACCTCGGACACCAGTGAACTGAAAGAACCCGAGAAGGTAAGAGCTTCCCAAGAGAAGGCTCTCCAGGCACTGCAGCAATATACAATCGCAAGGTATCCCGAGATGCCGGCAAAGTTTGGAGAGTTGCTACTCAGGATTCCGGACCTGCAGAGGACCTGTCAGGCCGGGAAGGAGTTGCTCAGCGCAAAGCGTGCCGAGGGCGAAGGCAGCTCGTTCAATTTACTAATGGAACTTCTACGAGGAGATCATTGA
Protein Sequence: MSEQNGPTEGPGPGWWPPAQSWKSSSLGARTEAGKNVSVTTINVPPAHEMHDGKSVCKYLGGQNGVTVSVVSSCGSASAPGSSNVVGTGSAGESGSVDDVEDSDGEVSKIDFRGVNLRTKKKRDASGGQESENSAIGTDNIQQQPERPMSWEGELSDQEMSSNTITNQDHEETFMEGVQVCSASPGPQEQKFPIKPEPDFRSSPGLALGSLNETALPLTHAQQLQQQQQQQQQQQQQQRGLDGLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHSHPQQHHQVTQGSPLHLPAASGATHHYSTPGSELSEGLAEDQEDCRIAPAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLIGGPTGGISGDKITGGTCSPAPPGSEHHHSMRHHSNHSHKLQVVPQLLQDIMDVEHLWHYNDNDRVTSGQGSGISGGNGSGSASGGGGGGSVSGVSGSASGGGNSSGGGSSSAVGSNGNIPRGESSRPSSAGPPSSNHEQHSPPASTPSSNSTPNPNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676835;
90% Identity: iTF_00770401;
80% Identity: iTF_01130894; iTF_01130843;