Psmy007186.2
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- Rel
- Assembly
- GCA_030142225.1
- Location
- JARQST010000365.1:362379-367064[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-45 1.2e-41 142.6 0.1 1 168 81 270 81 271 0.93
Sequence Information
- Coding Sequence
- ATGCCTGagatttacgaaaatttccaGACCCTTCAAAACATCGTTGGTGAACCTTCAAACttatatccatatacatatgATTTTTCAGGACTTAACATGAATATCTTGAGTCCAAGTCATAGTTCCACTGATTCTCAAGGAACTAACAGCTCCGCATCACCAATGTCCATTTCGTCTTCCCCTCTTCACACACCAAATTACATTACCTTAAGCAATGCCACAGTCATGGGAAATCCACAACTTCGAATTGTGGTGCAACCTGTCGATAAATTCAGATTTCGATATAGATCTGAAATGATGGGAACACATGGAAGTTTATTGGGAGCCAGTAGTACTTCCAATCGTAAGAAGCAAGCACCTACAGTTGAACTTTTGAACTACCCTGGAAGAGCAGTAATTCGATGTACTTTGGTAACATCTGATCAGACACAAAGAATACCTCATGCTCATCATTTGGTACGAAGGGAAGATAATAACGATAGAGATGATCCATATGAAATTGAAGTATCTCAAGAAAATGGATATATTGCATCTTTTCAAGGCATGGGAATTATTCATACTGCTAAAAAACACATAAAGGAtgaattgataacaaaaatgaagCTAGAAGCATTGGAAAAGGCACGGCGATCGAATATAGATGCAAATCTTACTATCCGTGAAGAAACTCAGATTAAAATGGATGCTGAGGCAGcacagaaatatatgaatttaaataGCGTCGCACTTCGTTTTGAAGCATTATATTATAACCAAAATGGTGTACTAATACCTCTTACACCACCTGTGTACTCTAATCCTATAAATAATCTGAAGAGCGCCTTGACTGGCGAACTGAAAATCTGCAGGATTGACAAATGTACAAGTAGTTGTGATGGAAATGAGGAAGTCTTCTTATTGGTCGAAAAAGTTGGGAAAAaaaatataagaatcaAGTTTTTTGAGGTGGACGATGAAGATAAGATGATTTGGTGCGATTATGGACAATTCTCTGAATTAGATGTACATCATCAATACGCCATAGTATTTCGAACGCCTGCATATAAAGACAGAGAAATAACAACGGTGAAAGAAGTATTTTTGCAATTAGAACGACCTTCTGATGGGGATTGTTCTGACCCCATAAAATTTACTTACAAGCCGAGTGATAAAATGAGAAATAGAAAAAGGCTGCGCAACTCGTGCTCAGGAAGTGCAGAATTGTTTCCATCAACACTTCCTCGAACGAATGATGTTTCTGTTATGAGTGATCTGTTTCCATTAAATACAAACTGTATCAGCTCTCACGAGttggaaaaattgattaacGCTGACAAGTGTGATTCTGAGGAGttccaaaattattgtaaaaaccTCAACTTGGATATTTATTGTCAGACTCTTCCTCCAAACGATATCACAATGGACACTTCGGGTATGGAGACACAATTAACTGTAGATGGACTTGCCGCAGACCTACCTCGTGACGATGTTAATTTCTGCAAGAACATATTTCTTGAAATAGTCAATACTTCGAAAAAAGAACCGTCAAAGctgaaggaaaaatgtatgaccTTATTAAAAGAGAGAACAGCATATGGTGATTCTCCACTTCACTCAGCCCTTCGTCATGGGCAAATCGAAATCATCAAGTACATTTTACTACTTCTCGATAGCGAAGCAGACTTTAAGGCCTTGGTTGATGCACAGAATAGTTCAGGAAAGACACCTTTACATTATGCAGTGATACAAAATCAAGTGGCTGTGACAAAAGCCTTACTAATGCTGGGTGCAGATCCAAATATATGCGATGATCGTGGAGTATCACCATTGCATGCAGCTGTTAAAGttccgGAAGCAGGTCTCTGTGTTGATGCATTATTGACAAAAGACGTAAATATAGAAGCCCGTGACGATGCTGGTTGGAGACCTCTTCAGTTGGCAGCAGAAGCTGGATCTTTACATGCCGTAAAATCACTTGTAAAAGCCCGTGCTGACGTCAATAGCATTGAAATGTGTTATGGTCGTACAGCTCTCCATATTGCAGTTGAAGGAGGACACAAAAGTATTGTTGAATTCCTTCTAAAAGAGACTAATATTGACGTCAATAAGGGCAATTTCAATGGCAACACTGCATTGCACAGTGCTGTCGTAAATACTGGAACACGTGCTAAGGAGTTATGTGAATTGTTAATAAAGTACGGAGCTAATCCATCAATTGCCAATCATCATCGAAAATCCATCAAGACAGGAGGCGTTTCTGTAAAGCCTGAAGTCACTTCCGATGATGAAGATGGTGATGAGGAAAATGGACAAACCTCATTTGATCTTGCACGCAATAAGCCAGATTTGTATCAAGTACTAAGTGGTGAAGGGATGGATCAAATTGAAACATCGAAAGAAGTACGTGTGAAACAGGAAGTCGTGGAAGATTTATCTTGCTGGCCAAGCACTGACGAAATTTTGCGTTTAGCATCTATTCTTGATAAAACGCAAGGCTGGAGAAAACTTATAGAACGTCTAGATTATGGATTCTTGTTGTCTACTTTAGAAGATGAGCACAGCAGCCCTTCACTTACAATTCTAAATTATGCCGATTTACAAGGTGACATTTCAATACGATACTTGCGCGAAGTACTGAAGTCATTAAATGAGAAAGAAGCCGTTGCGGTAATCGATGAAATCTTGTCGAATCGTTAA
- Protein Sequence
- MPEIYENFQTLQNIVGEPSNLYPYTYDFSGLNMNILSPSHSSTDSQGTNSSASPMSISSSPLHTPNYITLSNATVMGNPQLRIVVQPVDKFRFRYRSEMMGTHGSLLGASSTSNRKKQAPTVELLNYPGRAVIRCTLVTSDQTQRIPHAHHLVRREDNNDRDDPYEIEVSQENGYIASFQGMGIIHTAKKHIKDELITKMKLEALEKARRSNIDANLTIREETQIKMDAEAAQKYMNLNSVALRFEALYYNQNGVLIPLTPPVYSNPINNLKSALTGELKICRIDKCTSSCDGNEEVFLLVEKVGKKNIRIKFFEVDDEDKMIWCDYGQFSELDVHHQYAIVFRTPAYKDREITTVKEVFLQLERPSDGDCSDPIKFTYKPSDKMRNRKRLRNSCSGSAELFPSTLPRTNDVSVMSDLFPLNTNCISSHELEKLINADKCDSEEFQNYCKNLNLDIYCQTLPPNDITMDTSGMETQLTVDGLAADLPRDDVNFCKNIFLEIVNTSKKEPSKLKEKCMTLLKERTAYGDSPLHSALRHGQIEIIKYILLLLDSEADFKALVDAQNSSGKTPLHYAVIQNQVAVTKALLMLGADPNICDDRGVSPLHAAVKVPEAGLCVDALLTKDVNIEARDDAGWRPLQLAAEAGSLHAVKSLVKARADVNSIEMCYGRTALHIAVEGGHKSIVEFLLKETNIDVNKGNFNGNTALHSAVVNTGTRAKELCELLIKYGANPSIANHHRKSIKTGGVSVKPEVTSDDEDGDEENGQTSFDLARNKPDLYQVLSGEGMDQIETSKEVRVKQEVVEDLSCWPSTDEILRLASILDKTQGWRKLIERLDYGFLLSTLEDEHSSPSLTILNYADLQGDISIRYLREVLKSLNEKEAVAVIDEILSNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394898;
- 90% Identity
- iTF_00297314; iTF_00295011; iTF_00292710; iTF_00293486; iTF_00298076; iTF_00296541; iTF_01198437; iTF_01199176; iTF_00770144; iTF_01394898; iTF_01475219; iTF_00254852; iTF_00254088; iTF_00252586; iTF_01472948; iTF_01474454; iTF_00253335; iTF_01473687; iTF_00251837; iTF_00292060; iTF_00295776; iTF_00291304;
- 80% Identity
- -