Psmy007576.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- Bgb
- Assembly
- GCA_030142225.1
- Location
- JARQST010000391.1:166685-172657[+]
Transcription Factor Domain
- TF Family
- CBF
- Domain
- CBF_beta domain
- PFAM
- PF02312
- TF Group
- Beta-Scaffold Factors
- Description
- Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-85 2.4e-81 271.4 0.1 1 164 39 199 39 201 0.98
Sequence Information
- Coding Sequence
- ATGATGCACGCGATGAGTGAACATGCTGGGGCTGCGGGGGGTCTTGGGGTTGGTGTTTTACCATTTGATGGTATGGGGCTGTATGAACAGCCGCGACCACGACttgttttcaaaatgccaCGTGTTGTACCTGATCAGAAAGCGAAATTTGAAAGTGATGAGCTATTCCGAAGATTAAGTCGAGAGAGTGAGGTCAGATATACCGGATACCGGGACAGACCCATCGAAGAACGACAGGTCCGGTTTCAAAATGGATGTCGTGAAGGACACACGGAGATCGCCTTCGCAGCTACCGGGACTAATCTTCAACTAGTATTTGGTCCTGCACCTGGAAATTATGCGAATGATCCAATAGATTGTGACTTCGATAAGGAGCATGGCAaaGTTCATCTAAGGTCTCACTTGATCATGAACGGTGTGTGCGTCCGATGGAGAGGATGGATCGACCTGGAACGTTTGGATGGCGTTGGTTGCCTCGAATTCGATGAAGAACGTGCCACTCAGGAAGACGCTCTGCTGCGAGATCAGATCGAACGTTATAATCAGAGAATAAGAGATTTcgaagagaaacagagagcaTATAGAAGTGCGGCCGCTCAACCGCCTAACCtgaatcatcatcatcatcatggaCATCACGCGCATCATGTTACGACCGCTGGTGCTACGGGTGTCGAGCCTCATTTGGCTCATCGCCAGGATCCTGAGTTGGAGGTTAGACTTAGGGCTTATTGA
- Protein Sequence
- MMHAMSEHAGAAGGLGVGVLPFDGMGLYEQPRPRLVFKMPRVVPDQKAKFESDELFRRLSRESEVRYTGYRDRPIEERQVRFQNGCREGHTEIAFAATGTNLQLVFGPAPGNYANDPIDCDFDKEHGKVHLRSHLIMNGVCVRWRGWIDLERLDGVGCLEFDEERATQEDALLRDQIERYNQRIRDFEEKQRAYRSAAAQPPNLNHHHHHGHHAHHVTTAGATGVEPHLAHRQDPELEVRLRAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394046;
- 90% Identity
- iTF_00770136; iTF_01198429; iTF_01199168; iTF_00252577; iTF_00293478; iTF_01472939; iTF_01474443; iTF_01475211; iTF_00253327; iTF_01473679; iTF_00292051; iTF_00294228; iTF_00298068; iTF_00251829; iTF_00296533; iTF_00295768; iTF_00297306; iTF_00254843; iTF_00295003; iTF_00292702; iTF_00254080; iTF_00291296; iTF_01394890;
- 80% Identity
- -