Pkot008441.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachliopta kotzebuea
Gene Symbol
-
Assembly
GCA_018246255.1
Location
DWLS01004826.1:1-13095[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.32 29 6.1 0.3 1 23 530 552 530 552 0.96
2 11 6.4e-05 0.0058 17.7 2.1 1 23 564 586 564 586 0.98
3 11 0.0012 0.11 13.7 3.4 1 23 592 614 592 614 0.99
4 11 4.1e-06 0.00037 21.5 3.1 1 23 621 643 621 643 0.99
5 11 1.8e-05 0.0016 19.5 0.2 1 23 649 671 649 671 0.93
6 11 1.9e-06 0.00017 22.6 0.0 1 23 677 699 677 699 0.98
7 11 4.6e-06 0.00042 21.3 1.9 1 23 705 728 705 728 0.96
8 11 0.0003 0.027 15.7 1.8 1 23 734 757 734 757 0.95
9 11 0.00017 0.015 16.4 0.8 2 23 764 785 763 785 0.97
10 11 1.6e-06 0.00014 22.8 0.3 1 23 791 813 791 813 0.97
11 11 0.0024 0.22 12.8 0.5 1 23 819 843 819 843 0.94

Sequence Information

Coding Sequence
ATGAACTGCTTCGTGTGCAATAACAGAGCTGGCGTTTCACAAAGGAATGGTGTTAATATATTCGGAGATTCAATAACACTGCAGTCCGGAAAGAAGTTGGCTGAGGTATTAAACATGATAGTCGAGAGGCCGGTGGATGAGGCTGGGGCACACTCGAAGATCCTCTGCAAGAAATGCTACAAAACATGTACGGAATACGACTCCATACAAATCAGATTGAAGGTCATACAGACATCCATGTTGAGCCAGTTTAAAAAGACGTTGCAGAGTCATAACTTGAGCTACCAGACTGAAAACAAAGAGGTAGCATTGAAAGAAATCGCAATGTGCGGCGAAAAGAAATTCGAGGGTAAGAAGATCGTGTTGCCTGCTTCAAAGCTGCAGCCCCTTCCGGCGGATTACATGCTCAAGGCTGGGAAGTGGCAGCCTGCCGCTACTATCGCCTCCAAATTCAACAACCAGGAAATCAAGATCCTGACGCCGTCTACGTTGAACCTTAAGGTGACCGTCGGTACATCGGTACTCACTCAGAGCATTAAAACGTCCAGCTCATTAACCGGAAAAGCGCAAAGAACCACCAGCCAGAACTTCTCAGCACCGCAGACGCTCTCCATCGTCACATCATCCGTCATGACAGCAGCGACCACGCCGTCGGTAGCAAGCGTGAAACCGTCCAACTCGGTGCTAAGCATCAACATGAAGGATCTTCAGAAGAACAACCTCACTTCAGCTATCCTAGCGAAGGTCCTCGAGAGGACATCCGATCTGGAAGGCTTTAGACAAGACGGTAGTAATGTCGGCAGTGATGCTGGCAACGAGGAGCAAGCTATGGAGATTGACGAAGATTGTTCCTTAGCAGTAATAACGGCATCTGAAGAGAACGCGAAGATGTTCAGCGAAACCACGCCCAAGTTAGACGCAGACGGCGATAAGACACAGTTAGACGGTTACTTCGACATGAGCCTGCTATCCTGTCCCACCGACGGTGCTGAGGATCTGGAGAAAAAGTACATCCTCGGCAAGCTAGAAATCCTGGACGACGACAACGACGATGAACACACGATATTAATGGACGGTGAGGACGGTTCCATTATACGCGTGGTCTCCGGAAAGAAGCTGCTGTACGGCGACAGCGAGATCTCTCTGGTGGTGCCCGGCGAAGGCGAAGGCGACGGTGACGGCGAGAACGGCGACAGCCAGgATTCCAATGATGACGCGCAGATAGAGCTGCAGGTATCAGGCGACGAGGAGACTGCGAATGCGATCATTGCGGCGGCGCAGGAACAAGGTGGTGCATTCATAAAGGTGGAGTCGGGTGAGATGTTCCAGGTGAAGTCCGTCCAGAGCAAGGTGGAGAGCGAGACGGAGTCCAAGAGCGACGCTGATGTGATTATCACTCGAGTGGACGGGCAGTACAAATGTTTGATATGCGAGAGGAACGGAGAGGAGAGCCTGACCACCAATCGTGGTATTACCATGGAGAAGAGGAAGTACGAGCATATCATTCTTTCAAATGTAGAGGGCGCAATATTCGCGGATGCTGCAAGCGCAGCGCAGCACGCGCGCTCTGCTCACGACGCGCGCCTGCACTACTGCGCTCTCTGCGGCGAACTGATGCGAAGGAAAGCAGACTACATCGCGCACCTTGATAAGCACAGCCCAAAGATACAATCTGAAAAGAGCAAAACCCACGAGTGCACGatatgcaataaaaaatacaaCTCCCGTCAACTGCTCTCGGAGCACATGAACGTGCACAACGGCGAGCGGCCGTACCGCTGCGATGCCTGCGGGAAGACCTTCGCCTCCAAGTACACCCATCAATCACACCTCAAAACGCACCTGGACAGGCCGCGACCGTTCAAGTGCAGCCAATGCGGAAAATCGTTCCTCACGCAGCAGAATCTCACTCAGCATCAGAAGACGCATTCCGGCGTCAAGGAGTTCATCTGTAAAGTATGCGGCAAAGCGTTCGGCACACAGCACAATCTGGAGGTGCACGGCGTTGTGCACTCGGGTAGCCGGCCGTTCGTGTGCGGAGTATGCGGGAAGGCTTTCGCACGGCGCGCTGAAGTGCGCGACCACATGAGGATACACACCGGCGAGCGGCCGTTCTCGTGCGAGATTTGCGGCGCGAGGTTCACCCAGCGCTCGAACCTGCACTCGCACCGTCGCGCTACCCACCTCGACGACAAGCGTTATAAATGCCAACTCTGCCCCAAACGCTTCAAGCGACGCAGGCTGCTGGACTACCACGTGAAGGCGTCGCACACCGGCGAGCGACCGCTGCAATGTGAGGTGTGCCGGGCGACCTTCGTATACCCAGAGCACTACAAGAAACACGTGCGCATACACAGCGGCGAGAAACCGTACGTGTGTGAGGTTTGCGGGCGGCCGTTCAACACTCGCGACAACTTGAACACGCATCGGTTCGTGCACAGCGATAAGAAGCCGTACGAGTGCGTGGTGTGCGGTGCTGGGTACATGCGCAAGCAGCTGCTCTACCACCACATGAACACCACCGGTCATTTGGCTGAATCGATAATTGTGAACCAGCCTAGAATAATGAAGGTTCCTGATGTTGTGACGTCGACGGCCTCCTTGGTCCTGGACCAGATTGGCGGGACCTCGTCCACCATCGCGGACTCC
Protein Sequence
MNCFVCNNRAGVSQRNGVNIFGDSITLQSGKKLAEVLNMIVERPVDEAGAHSKILCKKCYKTCTEYDSIQIRLKVIQTSMLSQFKKTLQSHNLSYQTENKEVALKEIAMCGEKKFEGKKIVLPASKLQPLPADYMLKAGKWQPAATIASKFNNQEIKILTPSTLNLKVTVGTSVLTQSIKTSSSLTGKAQRTTSQNFSAPQTLSIVTSSVMTAATTPSVASVKPSNSVLSINMKDLQKNNLTSAILAKVLERTSDLEGFRQDGSNVGSDAGNEEQAMEIDEDCSLAVITASEENAKMFSETTPKLDADGDKTQLDGYFDMSLLSCPTDGAEDLEKKYILGKLEILDDDNDDEHTILMDGEDGSIIRVVSGKKLLYGDSEISLVVPGEGEGDGDGENGDSQDSNDDAQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFQVKSVQSKVESETESKSDADVIITRVDGQYKCLICERNGEESLTTNRGITMEKRKYEHIILSNVEGAIFADAASAAQHARSAHDARLHYCALCGELMRRKADYIAHLDKHSPKIQSEKSKTHECTICNKKYNSRQLLSEHMNVHNGERPYRCDACGKTFASKYTHQSHLKTHLDRPRPFKCSQCGKSFLTQQNLTQHQKTHSGVKEFICKVCGKAFGTQHNLEVHGVVHSGSRPFVCGVCGKAFARRAEVRDHMRIHTGERPFSCEICGARFTQRSNLHSHRRATHLDDKRYKCQLCPKRFKRRRLLDYHVKASHTGERPLQCEVCRATFVYPEHYKKHVRIHSGEKPYVCEVCGRPFNTRDNLNTHRFVHSDKKPYECVVCGAGYMRKQLLYHHMNTTGHLAESIIVNQPRIMKVPDVVTSTASLVLDQIGGTSSTIADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01494490; iTF_01115863; iTF_00180672; iTF_00249872;
90% Identity
-
80% Identity
-