Pkot009421.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01005651.1:5801-12459[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 8.6e-06 0.00078 20.5 2.1 1 23 162 184 162 184 0.99 2 28 0.0016 0.14 13.4 0.7 2 22 217 237 216 237 0.93 3 28 0.00014 0.012 16.7 0.1 3 23 270 291 268 291 0.96 4 28 0.003 0.28 12.5 2.0 1 23 343 366 343 366 0.96 5 28 0.011 0.99 10.7 0.2 1 23 380 402 380 402 0.95 6 28 0.00032 0.029 15.6 1.7 2 23 440 461 439 461 0.95 7 28 0.0019 0.17 13.2 1.6 2 23 503 525 503 525 0.97 8 28 0.00021 0.019 16.1 0.9 1 23 575 598 575 598 0.97 9 28 0.0035 0.32 12.3 0.2 1 23 655 677 655 677 0.97 10 28 0.014 1.3 10.3 6.1 2 23 689 710 688 710 0.96 11 28 0.086 7.8 7.9 2.3 2 23 722 743 721 743 0.96 12 28 0.018 1.6 10.0 1.1 1 23 753 775 753 775 0.98 13 28 0.0012 0.11 13.7 8.2 1 23 803 825 803 825 0.96 14 28 2.6e-05 0.0023 19.0 3.5 1 23 836 858 836 858 0.98 15 28 0.0016 0.14 13.4 1.0 1 23 866 888 866 888 0.97 16 28 0.0038 0.34 12.2 0.2 2 23 908 930 908 930 0.98 17 28 1.4 1.3e+02 4.1 1.1 1 23 948 970 948 970 0.91 18 28 0.078 7.1 8.0 4.6 1 23 977 999 977 999 0.98 19 28 0.02 1.8 9.9 4.7 2 23 1010 1032 1009 1032 0.95 20 28 0.0014 0.12 13.6 0.2 2 23 1055 1076 1054 1076 0.95 21 28 10 9e+02 1.4 0.5 2 20 1080 1098 1079 1100 0.81 22 28 0.00017 0.015 16.4 0.7 1 23 1156 1178 1156 1178 0.97 23 28 0.16 14 7.1 1.5 5 23 1188 1206 1185 1206 0.94 24 28 0.014 1.3 10.4 0.8 2 23 1217 1239 1216 1239 0.95 25 28 0.24 22 6.5 4.5 2 23 1256 1274 1256 1274 0.93 26 28 1.7 1.5e+02 3.8 1.8 2 21 1278 1297 1277 1298 0.93 27 28 0.87 79 4.7 2.5 2 23 1347 1368 1346 1368 0.93 28 28 0.003 0.27 12.5 0.2 2 23 1379 1401 1378 1401 0.95
Sequence Information
- Coding Sequence
- GTGTATGAAGGTGATGGCCTACCTGATAAGATTTGTTCGGAATGCGTTCAGAAGCTTAGCAGTGCTCATATCTTTAAACAGCAGTGTGAGCGATCAGATCAAGAGCTGAGACGAAACTATGTGCCACCGCCGGGTTTAAGCACCATACCTTCACCACCGAACAGGCAAAGTAGTGATTCTGCATTCTCAAACCATACCGACACATCCAGCAGCAACAAACTCATATCAtcgaaagaaagtaaaatttcaCCTGGAAACCGAAGGCGAAAACGCAGTGTACGAAGCAATGATAATGCTTCCACAAGCAGCCAATCGCACGACTACCAACCCACTTCTTCTAAACGAGTCGAAGAACTCCGATCATCTGAGAAAAGACCAAGGGGATCCGTCAACACGACTTCAATGGACTCTGACTACGACGATTACAGTATTTCTCAATTCTCTGGCGAAACCGACTCCGATGAACCGTTGACAAAGAGCCAATATAAATGCAAAACTTGCGGTAAAGTGTTCCCATCCAAGCATAGTGTAAATGCTCACACAAAAGTCCATGTTAGACAATCATTGAAACTAAACGCCGTTGTAAACATACCGCAGCCAACCAGCGCCGCTAATTTAGAAGACGCCACAGATGTCGAGGATAAGCTGACGTGCGACAAGTGCGAGAGGACGTTCAAGTTGAAAATAATGTTGAAACGGCACCAGGAGACGTGTGCCGGCAAGTCACCTCCAAAATCACCTATGAAAGAGTTGCTGGTGTCTTTGGAGCCGATCGACGCGGAGGCTAAGAATGATAACAAGGTCATCTGTGAAATCTGCACAGTTAAGTTTAAAAGTATGGAAAATTTGGAGATACACATGAGGGTGGTGCACGCGGCCGTACTCAAACGAGACAGACGCGAACAGAACGTGGCCAATGGGAAGATCAACTTCCCCTGTTACTACAAATGTGGTCAGTACCACGACGACTACAATATGTACACCAAACACTTCGACGTCTGTCCAAATAAGAACGACTCGCTCATATTTACTTGTCCTTTGTGCCAGAAAGTAGTAACGAAAAAGAGTTCCTATTTTGGCCATATAAAACATATCCATTTCAAATATCAGAACAGTGCGGGAACTTCTAGGGAATCGTTTGATTGTCGTATATGCAAAAAGAAACTGGCGACACAAAATCTTTTGATCACTCATCTAGCTGCTCACATGTCTAATGTCGAGAACGACGACGTGGCTGAACCGGGCTTTGGTTTAGGAGAAAATGAAGATGAAAATGAGCCGGTGTACACCAGCTCACATGTTTCTAGTGGACCGCTAAAATGTAGCATGTGCGATAAACGATTCACTTATAGGAAGGCCCTGATGACCCACGAGGATAAACACCTCTCCGGCGGTATACGGGTAAAGACAGAACCGCCCGAGAAGAACGATTCAAGTAACAGTTTGCTAAGCGAGTCTCACCATCAGTCTGAGTCTGAATCTAGTCAAGATGAAGGTGACGATAACACGTGTGACATTTGCGAGAAACAATTCTCTTACAGACGCGTACTGATCCAGCACAAGCGAACCAAACACAACATGAGCTCGGGGACGAAGCGTGCGAAAATCAACCTCAAAGACTGCTCCGTGCGCTGTCTGATATGCGACGTTGAAATGAAAGTCAGCGCTATAAACGAACACAATCAGAAACACACGTCGGTGAACATTAAACCTAGGAATCTGTACACTTGCGCGGAGTGCGATGTGCAGTTCAAAAGCTGCAGCTCGCTCGCCACACATATAAAGTTGGTGCACAGGCTGAAGCAAACGTATACGCCCAAGATGCAGGGTGCTGATTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGACGGAACCCCTGGCCTTGAGCCAGATACACAACGACTACGAAACGGTTCCGTCGACACAGGGGGAGGAAGAGCCGTTGGTAAATCTCAGCGGGTTCAATTGTCCGATATGCAACAAGAAGATGCCGACGTTGATATCGCTGAAGAGACACGTGAACTGGCACTCGAATTTTGGTAATAGTTTAGAGAAGAAGCTAGAGTGCTTTGTCTGCAAGGAGACGTTCCGGTTCCAGTGCCACTACAAGTTGCACATGCGAGAACACTACAATGATCCGAACATAGATCCGGCGCTGCTCACGTGCACTATATGCAACCGAAAGAGCAAACATTTGCGCGCGGCCAAAGCGCACATGAACTTCCATAAGCAAACACGCTTCAAGAACAAAGACTACCAATGTTCCATTTGCAAGAGGATCTTCCAGTTTAGGAAAGTTTACCTCTCGCACATGGCGATACATTACAAGCGCGGCGAAAGCATTAACTCGGTCGTCGGCATCGTGTTACCCACAACGGCGGACAAGACCGTATTCGACGGCACACACACCTGCCACCATTGCGGCAAAGTATGCTCCTCGGAGGTCTCTCTGAAGCATCACATAATATGGCACAAATCGAAGACGTCACTATTCGGCGACCGTCACGAATGCCACATTTGCGGCATTCAATTCACAAATAAGAAAAGACTGGAGCTTCATATCAGAACTCACTACGAGGATGATAACGGGCCGTATAAGTGCCAGATTTGCGGCAAGGGTTTCATTGATGAAGTATATCATAAAAGACACGTAAGGGGTCACAATTTTGACCATCAATCACACAAAACGAGGATAGAGAATCTTCGTAAAGATAAAGCGAAATGTCCAATTTGTGCCCGCTATTACCCAGATTTGGTGAAACTGATACGTCATTTGCGGCGAACGCATCCCGAAAGCAAAATGATTAAGACTGATCCGGATGCACCTCCACAGAACTACTTCTCGTGCAAACTGTGTGCTAAAGTCTTTTTAGACGAGCGAAGGTTACGTCATCACGAGGAAGCTCACTTGAGGAAGCCAGAGTTTTTCAAGTGCAAGTTCTGCGGCAAGAAAACCATCTCCTTGAAAAATCATagaattcatataaaatctcACTTAACCCAGAAGTACACAGATAAGCCACTGAAGTGTACGCACTGTGAGGAAACCTTCATGAGGGGTTACGACCTGCACCACCATTTGCGcgacatacacaacattaacgAAACTTGGATAGCGGAGCGCACTGAGAAGAAACTTAACGGGCCATTGAAAGATTTGCAGTGCTCCATTTGCCTTAAGGTGTTGGCTAACAAAGGAAACTTTGAGCGGCACATTGATTACCACAACTCGCTGAGGTGTAATTACTGCTTCGATTACTTCAGCTCGCTCAGGTTCTTGGAGGGTCATCTCATGTTCAGCtgtgaaaagaaaaagttGATCGGCGACACGGAGATTTATCCGAAGAAAGTGAAGTGCCACCTTTGTTACAAAGCTTTTCATTTGCAAGTGAAATTGGATTGCCATTTGCGAATTCAACACGGCATCATGGTTAATAAAGAGGAATCCGAAAGCAGGAAGGACTTTGTCTGCGACTACTGCTTCAAAGTTTTCGAGAACGAGTACGCTTTGAACACACACAGGATTTATCATCGCACTAACGGATACTACGGCTGCATTTATTGCAACCGGAAGTTCAGTACTATAACGCTTTACAACAAACACAAGAATTATCACATGTCACAACACAATGTCGACAACCCGACGAAGTGCGACCACTGCGACGAAACATTCGTCGCGTTCAGAGAGATGATCTACCACATGAGGGATGTACACGGCGATGATAAGGAATGGATTATAATGCGCAAGGAATCCATCGAGGAGAAGTGCCAtatttgcaataaagttttcttcAACCTCCAAAAGCATTTGACGTACCACGAAGAGAATAAATGCAAGAAATGTTCAGAGTATTTCTTTTCACAAGTCGATTACGACAACCATCTGTGCGCCATAGAGAGCGACGAGGAAGCGGAGGAGATCAGCGAAACCGATCCTCGGCCGGTCTACACCGAGTGCGATTTCTGCTTCAAGCCAACTACAAAGAAGAAATCTAAAAGTCTGCACGACCACATTCACAGGGTCTCCGGCGCGATCTCGTGCCGTTTCTGTTCGCACAGGTTTAAAACCATGGACGCTTTCAACATCCACGCCTTCTCCCACCGAAGCAGGAAGTATGACAAGAAACCGATCAAGTGCCGTCAGTGCCCCGAGAAGTTTATCCGTTACGGGCCGTTCATAAAGCACATGAGGGCCGTGCACAAGTCTAAACAGAAGATGCACTACCGTGCTTTGGTGAAGCCGGAGCCTTGCGCCGTTTGCGGAGATTCCTTCCCGAACCTCCACAACCACTACCGAGCGCACCTGCAGAACCAATGCCAGTTGTGCAGGAAATACTTCACATCGTGTAAACTCTTTTCACTGCACGAATGTGATAAAGAGGACTCCGATCCGTCTAAAGTGTTCACGAGTGACCTGGACCTTGTGGCCCTCATTAATGCCTACACTCCGAAAGACGAGAAGGACGATGAGAAGTACTACGGTCACACTGATACTGAGGAGGAGAACATAATCGAGAAGAGGACGAATAATCACGTGGAAGAGTTCATGACACATGATGAATATAGCCAGAATTCTACGGACATTAACATGCATATGATGGTTCACACACCGATCATATCTGATGTGCTCTCACTCTACCAGAAAAAGGATCAGAATGACATCCCGGTGTCTGATGATGTTATCAATTTGAGCGATGAGGACCGCTTGGACAGTGAAAGGGTAGTCACTGTTATAACGATTGAtgattga
- Protein Sequence
- VYEGDGLPDKICSECVQKLSSAHIFKQQCERSDQELRRNYVPPPGLSTIPSPPNRQSSDSAFSNHTDTSSSNKLISSKESKISPGNRRRKRSVRSNDNASTSSQSHDYQPTSSKRVEELRSSEKRPRGSVNTTSMDSDYDDYSISQFSGETDSDEPLTKSQYKCKTCGKVFPSKHSVNAHTKVHVRQSLKLNAVVNIPQPTSAANLEDATDVEDKLTCDKCERTFKLKIMLKRHQETCAGKSPPKSPMKELLVSLEPIDAEAKNDNKVICEICTVKFKSMENLEIHMRVVHAAVLKRDRREQNVANGKINFPCYYKCGQYHDDYNMYTKHFDVCPNKNDSLIFTCPLCQKVVTKKSSYFGHIKHIHFKYQNSAGTSRESFDCRICKKKLATQNLLITHLAAHMSNVENDDVAEPGFGLGENEDENEPVYTSSHVSSGPLKCSMCDKRFTYRKALMTHEDKHLSGGIRVKTEPPEKNDSSNSLLSESHHQSESESSQDEGDDNTCDICEKQFSYRRVLIQHKRTKHNMSSGTKRAKINLKDCSVRCLICDVEMKVSAINEHNQKHTSVNIKPRNLYTCAECDVQFKSCSSLATHIKLVHRLKQTYTPKMQGADLADFCEVVVTKTEPLALSQIHNDYETVPSTQGEEEPLVNLSGFNCPICNKKMPTLISLKRHVNWHSNFGNSLEKKLECFVCKETFRFQCHYKLHMREHYNDPNIDPALLTCTICNRKSKHLRAAKAHMNFHKQTRFKNKDYQCSICKRIFQFRKVYLSHMAIHYKRGESINSVVGIVLPTTADKTVFDGTHTCHHCGKVCSSEVSLKHHIIWHKSKTSLFGDRHECHICGIQFTNKKRLELHIRTHYEDDNGPYKCQICGKGFIDEVYHKRHVRGHNFDHQSHKTRIENLRKDKAKCPICARYYPDLVKLIRHLRRTHPESKMIKTDPDAPPQNYFSCKLCAKVFLDERRLRHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKSHLTQKYTDKPLKCTHCEETFMRGYDLHHHLRDIHNINETWIAERTEKKLNGPLKDLQCSICLKVLANKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLMFSCEKKKLIGDTEIYPKKVKCHLCYKAFHLQVKLDCHLRIQHGIMVNKEESESRKDFVCDYCFKVFENEYALNTHRIYHRTNGYYGCIYCNRKFSTITLYNKHKNYHMSQHNVDNPTKCDHCDETFVAFREMIYHMRDVHGDDKEWIIMRKESIEEKCHICNKVFFNLQKHLTYHEENKCKKCSEYFFSQVDYDNHLCAIESDEEAEEISETDPRPVYTECDFCFKPTTKKKSKSLHDHIHRVSGAISCRFCSHRFKTMDAFNIHAFSHRSRKYDKKPIKCRQCPEKFIRYGPFIKHMRAVHKSKQKMHYRALVKPEPCAVCGDSFPNLHNHYRAHLQNQCQLCRKYFTSCKLFSLHECDKEDSDPSKVFTSDLDLVALINAYTPKDEKDDEKYYGHTDTEEENIIEKRTNNHVEEFMTHDEYSQNSTDINMHMMVHTPIISDVLSLYQKKDQNDIPVSDDVINLSDEDRLDSERVVTVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180671;
- 90% Identity
- -
- 80% Identity
- -