Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01000918.1:1541-9861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.011 1 10.7 1.6 2 23 228 250 227 250 0.92

2 23 0.27 24 6.3 0.3 1 22 625 646 625 646 0.95

3 23 5.3 4.8e+02 2.3 0.3 1 22 688 709 688 711 0.82

4 23 0.64 58 5.2 0.5 2 21 721 740 720 741 0.93

5 23 0.5 46 5.5 0.0 2 23 749 771 748 771 0.89

6 23 0.0047 0.43 11.9 0.1 3 23 792 813 790 813 0.96

7 23 0.0051 0.46 11.8 2.5 1 23 819 842 819 842 0.95

8 23 0.099 8.9 7.7 0.0 1 23 868 891 868 891 0.90

9 23 0.0043 0.39 12.0 3.5 1 23 896 918 896 918 0.97

10 23 0.0084 0.76 11.1 0.3 1 23 924 947 924 947 0.95

11 23 0.0018 0.17 13.2 1.3 1 23 961 983 961 983 0.97

12 23 0.00014 0.013 16.7 1.8 1 23 1032 1055 1032 1055 0.97

13 23 0.0011 0.099 13.9 1.4 1 23 1117 1140 1117 1140 0.96

14 23 0.00087 0.079 14.2 2.1 2 23 1164 1186 1163 1186 0.95

15 23 0.0043 0.39 12.0 0.0 2 23 1192 1214 1191 1214 0.94

16 23 0.0078 0.71 11.2 0.2 1 21 1257 1277 1257 1278 0.95

17 23 0.00033 0.03 15.5 1.0 1 23 1288 1310 1288 1310 0.93

18 23 6.9e-05 0.0063 17.6 0.3 2 23 1400 1422 1400 1422 0.93

19 23 1.4e-07 1.3e-05 26.1 1.1 3 23 1429 1449 1428 1449 0.98

20 23 0.099 9 7.7 0.0 3 23 1470 1490 1468 1490 0.95

21 23 0.11 10 7.5 0.0 1 23 1511 1533 1511 1533 0.98

22 23 0.022 2 9.8 0.6 1 23 1539 1562 1539 1562 0.95

23 23 0.00071 0.064 14.5 0.4 1 23 1570 1593 1570 1593 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.011	1	10.7	1.6	2	23	228	250	227	250	0.92
2	23	0.27	24	6.3	0.3	1	22	625	646	625	646	0.95
3	23	5.3	4.8e+02	2.3	0.3	1	22	688	709	688	711	0.82
4	23	0.64	58	5.2	0.5	2	21	721	740	720	741	0.93
5	23	0.5	46	5.5	0.0	2	23	749	771	748	771	0.89
6	23	0.0047	0.43	11.9	0.1	3	23	792	813	790	813	0.96
7	23	0.0051	0.46	11.8	2.5	1	23	819	842	819	842	0.95
8	23	0.099	8.9	7.7	0.0	1	23	868	891	868	891	0.90
9	23	0.0043	0.39	12.0	3.5	1	23	896	918	896	918	0.97
10	23	0.0084	0.76	11.1	0.3	1	23	924	947	924	947	0.95
11	23	0.0018	0.17	13.2	1.3	1	23	961	983	961	983	0.97
12	23	0.00014	0.013	16.7	1.8	1	23	1032	1055	1032	1055	0.97
13	23	0.0011	0.099	13.9	1.4	1	23	1117	1140	1117	1140	0.96
14	23	0.00087	0.079	14.2	2.1	2	23	1164	1186	1163	1186	0.95
15	23	0.0043	0.39	12.0	0.0	2	23	1192	1214	1191	1214	0.94
16	23	0.0078	0.71	11.2	0.2	1	21	1257	1277	1257	1278	0.95
17	23	0.00033	0.03	15.5	1.0	1	23	1288	1310	1288	1310	0.93
18	23	6.9e-05	0.0063	17.6	0.3	2	23	1400	1422	1400	1422	0.93
19	23	1.4e-07	1.3e-05	26.1	1.1	3	23	1429	1449	1428	1449	0.98
20	23	0.099	9	7.7	0.0	3	23	1470	1490	1468	1490	0.95
21	23	0.11	10	7.5	0.0	1	23	1511	1533	1511	1533	0.98
22	23	0.022	2	9.8	0.6	1	23	1539	1562	1539	1562	0.95
23	23	0.00071	0.064	14.5	0.4	1	23	1570	1593	1570	1593	0.96

Sequence Information

Coding Sequence: atgagtGTGAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCTATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCATCGAAAATAAGGGATTGTGTGTCTGTCGAGATAAACGAGGATGACGACTTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCATATTTTTAAGGCTGTGTGTGAGAGGACACAAAACAAACTAcagtcattattaaaaaacgatGGCAGCCAACTAGAAGAGGTGCACATAAAAAGTGAACCTTTATCTGATGAGGCTTATGATGATGGAGTTATTGTTGATGCATCATATCCTGACCTTGAGAGTGCATCAAGTAAAATTCAACCAGAAGGCCCTCCTATTCTGGCTTCATTGGGCCTCACACCAAGGAGTGATAAGAATTATATAGATCCCCGGATGGACTGGCACCGGGTGCACGCAATATTGGATATAATTCAAGATGAAGAGgGAATGGAGAgtgaaaataatgaagaagAAGACTACGAAGAAGAGATGAATGATAATAGTCAACATTTCCCTAATGTACCCAATATGCCTGAGGTCTCTATCACTGTTATGCGCCCATCTGGAGAAACTTTACATGCTCGTCAAGGAATCCAACAACTTGCTTCTAAGGAATGCCTGGTGTGTGGTCGCTCTTATAGATACTCCCATAACGCTAGGCGCCATGAGCTCAATTCACATGGTTTCGATAGGTACACTAATAAAGTTACAACCAAAAAGTCCCATAATGTACACATGCACCCAAAACTCAGGCCCAACCCTTTTAATCTTAAAGCTAGACTTATGCCAAATCCTATTAGCCACAAAATGCAATTAATTCCGAAAGGAATAAGTGCAAAAATTATCCAAGGGAACTCTGTCGCTTCACCTAAACCTATACCAATAAAAACACCAAACATTCCTCATAATAATTTACCATATCCACTACGTATAAAAGCGCTTAAAgatttacaaataaagaaaaaagaaccACATATTCTTAAAACTTTGTTGACTACAAAACCGGAAGTTTTAGTGTCGGAACCAGAAATTATGAACTCTGGGCCAGAAAGTCCAGAAACTTTGATATCCGAGCCAGAGATAGCATCGTTTCAAGTAGAAGCTATTCTCTCAGAACCAGATACCTATATTCAACAAGATGACGATGATGTAGATTgtgaaaatcaaaataatcaaGGTCATAATTATGATACGGTAGACATGGAGTCTGATAATGAGATTGAAATAGCTCGTCAGCAAGAAGGAGCTGTGGACGGAGAAGTTGATAATCAAGTAGATAACGAAGGGGAAGAAGGAAATGGAGTTGATAATGTAGATCacgatgatgaaaataatgtgGAAAGAAATCAAATTGACGATAATGCTGATAGTCAAGATGTGTTGCGGATTGTTGATAATACTGAGGGTGGAGGAGATGATGAAACCAAAGAGGGTGAAGAAGGAAACGAGGATAGGGATGATGAAGAGCAGCTAGAATATAACCATGACGATTATGACGACGACCTACCGCCTATAGCTCCAGTCGTAGAAATCAATGAAGATATGCAAACAAATTCCTACAACAGTGAGGCAAACGAAGAGGAAGAAATGGACGAAACTGGTGATGTAAATGATACCTTACTTGTTAAAGAACTAGACCCTGATAAACtgtatgtaacaaaaacaCAAAGAGACTTTATACTCAAACATCGTGACATCATTGAGCAAATTAATACAAAGAGATGCCTCTGTTGTGATAGGGAGCATCCGCGGCGTAAAGCTGTCATACAACATTTACAGAAAAACGGACACAAGGTCCCAAAGCATACTTGTTACAATTGTGTTGTTACTTTCGGTCATATCGGCGCTTTACTCAGCCACATGCGATCTAACACGTGCACTGATTTatggaaaataatttacaacgaAAATGGGATCACAGACGATTTAGTTTTGGAAGATGAACCTAAAGATACCAAAGTccaatataaagatatatttaatgctAGGTCATATGCTTGCAAATTATGTCCTGCGAAATTCCAACTGAAACAGTTCATTATGAAACATGTTTTAGACGTGCACGAGGATGGGCAGTCCCGCGTACAACTCATATGCGTTCACTGTAACTCGAGATTCAAGGATAAGGCTATATGGAAGAAGCACATTCGTAATGGGGAATGTACAGTTTACATCTCGTGCGACTTATGTCCAGAGAGATTCGGCAACATGCAAGATTTCAATGACCACGCATTGGCTGTACACGCGGGGAACTTTGATCAGTCTGATAATCCGAACAAATGCGTCGATGGAAGACCTACTGACTGTCCAATTTGCGGGAAGAAGAATAGCAGCTATCCAAATTTAGTGAAACACTTGAAAATTATTCATAGTGAAGAAAAGCCTCACTACTGCCAGCATTGTGAATCTAAGTTTGAACAAGCTGCCGATTTAAACAAGCATATCTACATGGAACACTCTGACAGAACGTTGGGAATGCAAAGCTTCGAGCCGGATATGTCGCTCGTTAAAGAAGAAGCTGAGGAATATCACTATTCCTGTACAGAATGTAACGCAATATTCGAGACCGTCGACGCTTGGACAGATCATCAAGTGGCTGAACATAATCAAGTTGCACATCACTGTGATCAGTGtgataagaaatttttaagacCGTCTGAACTCGCGGAACACAAGAATACGCATTTACGGGTAAAGTTTTATCCCTGCAGTATTTGCTCAAATTCGTACAGTACACCTCAGAAACTTTCCGAACACGTACAACAGAACCACCCGGGAGCCGCGGGAGCGTTTGCACCTTTGGATTACGAATTTTTCTGTGACATCTGTATAAGATCGTTCAAAAGTCGCCAGGCGTATTCGAACCATATGCGTATACACGCTAAGGTACCGACTACCAACAGAAAACCCGGGGATCCGAAAGGATTTGCTCCGCAAATTGTCGGGAAGCCAATTCGGTCATTTTCTGTTGTACAACCTAGTTTTCTTTCCTTCAAACCTAATTGCAATGTTCCTAATGCTCCTTATTCGTGTGATATCTGTGGAAAAGGTTTCATgcataagaaaaatatctgGAAGCACAAGAAAGTACTTCACGCCGATTTGGTTGGCGATAGGAATGACAGTGAAGAGAACACAATGCAGGCTTCTACTGAAGAGgatgaatataatttagacGAAAATGGAGCTATTCTGTCGACTCCGCAGttcaatagttttaattttactaatttaacaaatagCTTTCCGCAGCAACAGGCTCCCCAGGACGCTACGCCTTATTCTTGTGAGATATGTTTTAAACGATTCCCGCTTAGAACAAGTTTATGGAAACATAAACGAGCTAAGCACGGTATTATCAATGCGAGTGCCAGCGGCAGTGCTGACTCTCAAGGTATGATAGGAGAAGGTGGAAGATCGAGTTGTActatttgtaaaattacatTCTCAGACAAAAAATCGTACTACCGCCACAGAAAGAATGTTCACAAATCGTCGGCACAGATGTGCAAAATTTGCGGAAAACCTTTAAATTCTCCGGTAGAATTGTATGAACATTTGAAAGCTGCCCACGCTAGAGAGCTACTGGGATACAACGCGAGCCAAGGTTCAAGTAAACAGGAGATTGTTCAAGAATTAGAAGTTGAATATGAAGCTGATCAGGACTCTGTAGATCCCTCTATGGAGTATCAAGCCCGTTACCCATGCGACACTTGCGGTAAGCAGTTTGTAGGTTTGCTTGCTTTGCAAAACCACCAATGTATAAATCAATTACAGTCGTCCCCTCAAACGTTTGATTGCGAAATTTGTCACAAAAGCTATACCTCCATATCTGCACTAAAGAGCCACCGCGGCTGGCATTTACGTTCCCCTGACGGTAAAGCGGCCGCCAACAACACCGGCCTTTGGATGCCGCAGCACAAAGTTACTAGCAAAGTGAGTAAACACGAAGTCGTTGACCCGTCCCAACTTGCAAGAGTTACTCATTCAACATCTGTGAGTATAGCTAAAAGAAGACTTCCTCCAGAAGTGGAAGTGACAGTCGTTAACCCAAATAAGAAAATGCGCTCCGACGATTCGGTAGAGTTGGAGCAGCAGAACAATTCTTCAACGGGTGCCGAAGATAGATATTGTAACATATGCGATAAAGAGTTCACCAAGCGGGCGGCCTACCAACGTCATATGGACGAAGTTCATCAACCGAATTCCGTGTTCTGCCCCGTTTGTGATAAGAGTTTCACACGGAAATCTACGCTGATCGTTCACATGAAGAAACATTACGAAAGTGGAGAGGGCAGTTCCGCCGCTATCGATCAGATGGAGGAGGAAGCGCTGGCGTGTGACATTTGCGGTGCGCAGTATGAGAGCGAGAACGCTCTCGCCGCCCACCGAGTGATGCACGACGGCGACGACTCGGGCGAGTCGGAGGACGACGGCGCCAGTGTACCGCCGCCGGGCGAGTTCACCTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCCCGCGACCTCATCGCCCACCGCTCCATGCACTCGACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTTTACTTCGCGCGGGCCCTGGACCTCTCGTCGCACACGCGCGCCAGGCACGCGGACAATGAAAAGGTGTTTTTTCCGTGCGCGATGTGCGAGCGGTTTTATATGAACAAGAAGAGCCTGCAGCGGCACATTGAGATGGCCCACTGA
Protein Sequence: MSVNYDSVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKAVCERTQNKLQSLLKNDGSQLEEVHIKSEPLSDEAYDDGVIVDASYPDLESASSKIQPEGPPILASLGLTPRSDKNYIDPRMDWHRVHAILDIIQDEEGMESENNEEEDYEEEMNDNSQHFPNVPNMPEVSITVMRPSGETLHARQGIQQLASKECLVCGRSYRYSHNARRHELNSHGFDRYTNKVTTKKSHNVHMHPKLRPNPFNLKARLMPNPISHKMQLIPKGISAKIIQGNSVASPKPIPIKTPNIPHNNLPYPLRIKALKDLQIKKKEPHILKTLLTTKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPDTYIQQDDDDVDCENQNNQGHNYDTVDMESDNEIEIARQQEGAVDGEVDNQVDNEGEEGNGVDNVDHDDENNVERNQIDDNADSQDVLRIVDNTEGGGDDETKEGEEGNEDRDDEEQLEYNHDDYDDDLPPIAPVVEINEDMQTNSYNSEANEEEEMDETGDVNDTLLVKELDPDKLYVTKTQRDFILKHRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLICVHCNSRFKDKAIWKKHIRNGECTVYISCDLCPERFGNMQDFNDHALAVHAGNFDQSDNPNKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHSEEKPHYCQHCESKFEQAADLNKHIYMEHSDRTLGMQSFEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQNHPGAAGAFAPLDYEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSVVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVGDRNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFTNLTNSFPQQQAPQDATPYSCEICFKRFPLRTSLWKHKRAKHGIINASASGSADSQGMIGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSPVELYEHLKAAHARELLGYNASQGSSKQEIVQELEVEYEADQDSVDPSMEYQARYPCDTCGKQFVGLLALQNHQCINQLQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTSVSIAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNNSSTGAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGSSAAIDQMEEEALACDICGAQYESENALAAHRVMHDGDDSGESEDDGASVPPPGEFTCAQCGDGVATPRDLIAHRSMHSTPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01155687;
90% Identity: iTF_01176328;
80% Identity: -