Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01004450.1:2048-13947[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 4.8e-05 0.0043 18.2 2.2 1 23 25 47 25 47 0.97

2 20 0.00038 0.034 15.3 0.6 1 20 53 72 53 75 0.94

3 20 1.2e-05 0.0011 20.0 5.6 1 23 94 116 94 116 0.98

4 20 0.00011 0.01 17.0 4.7 1 23 122 144 122 144 0.99

5 20 2.2e-05 0.002 19.2 5.3 1 23 150 172 150 172 0.97

6 20 6.8e-06 0.00061 20.8 7.3 1 23 178 200 178 200 0.97

7 20 5.7e-07 5.2e-05 24.2 2.7 1 23 206 228 206 228 0.97

8 20 6e-05 0.0055 17.8 6.7 1 23 234 256 234 256 0.97

9 20 8.7e-05 0.0078 17.3 6.5 1 23 262 284 262 284 0.97

10 20 2.9e-07 2.6e-05 25.1 1.9 1 23 290 312 290 312 0.98

11 20 3e-05 0.0027 18.8 7.9 1 23 318 340 318 340 0.98

12 20 4.7e-06 0.00043 21.3 6.6 1 23 346 368 346 368 0.98

13 20 2.6e-06 0.00023 22.1 4.4 1 23 374 396 374 396 0.98

14 20 3.8e-05 0.0034 18.5 6.4 1 23 402 424 402 424 0.97

15 20 1.7e-05 0.0015 19.6 6.3 1 23 430 452 430 452 0.97

16 20 7.2e-06 0.00065 20.7 5.8 1 23 458 480 458 480 0.98

17 20 2.7e-05 0.0024 18.9 6.2 1 23 486 508 486 508 0.97

18 20 1.3e-06 0.00012 23.1 3.2 1 23 514 536 514 536 0.96

19 20 0.00043 0.039 15.1 0.3 1 23 543 565 543 565 0.96

20 20 0.0014 0.13 13.5 4.5 1 23 575 597 575 597 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	4.8e-05	0.0043	18.2	2.2	1	23	25	47	25	47	0.97
2	20	0.00038	0.034	15.3	0.6	1	20	53	72	53	75	0.94
3	20	1.2e-05	0.0011	20.0	5.6	1	23	94	116	94	116	0.98
4	20	0.00011	0.01	17.0	4.7	1	23	122	144	122	144	0.99
5	20	2.2e-05	0.002	19.2	5.3	1	23	150	172	150	172	0.97
6	20	6.8e-06	0.00061	20.8	7.3	1	23	178	200	178	200	0.97
7	20	5.7e-07	5.2e-05	24.2	2.7	1	23	206	228	206	228	0.97
8	20	6e-05	0.0055	17.8	6.7	1	23	234	256	234	256	0.97
9	20	8.7e-05	0.0078	17.3	6.5	1	23	262	284	262	284	0.97
10	20	2.9e-07	2.6e-05	25.1	1.9	1	23	290	312	290	312	0.98
11	20	3e-05	0.0027	18.8	7.9	1	23	318	340	318	340	0.98
12	20	4.7e-06	0.00043	21.3	6.6	1	23	346	368	346	368	0.98
13	20	2.6e-06	0.00023	22.1	4.4	1	23	374	396	374	396	0.98
14	20	3.8e-05	0.0034	18.5	6.4	1	23	402	424	402	424	0.97
15	20	1.7e-05	0.0015	19.6	6.3	1	23	430	452	430	452	0.97
16	20	7.2e-06	0.00065	20.7	5.8	1	23	458	480	458	480	0.98
17	20	2.7e-05	0.0024	18.9	6.2	1	23	486	508	486	508	0.97
18	20	1.3e-06	0.00012	23.1	3.2	1	23	514	536	514	536	0.96
19	20	0.00043	0.039	15.1	0.3	1	23	543	565	543	565	0.96
20	20	0.0014	0.13	13.5	4.5	1	23	575	597	575	597	0.99

Sequence Information

Coding Sequence: GCTATAAGTGAAGTGGATGTTGAACCAGGAACAAGTGCACCCATATCAGAATCAGATTCGTCCCCGGGTCATCATTCCTGTGATATTTgtggaaaaatatttcaattccgTTACCAATTAATTGTTCACAGACGATACCATGGTGAAAGCAAGCCATACACTTGTCAAGTTTGTGGCACTGCTTTTGCAAATGCTGTGGAGCTGTCTAGACACGGAAAATGTCATTtagcTGGAGATTCTACAGAGAGACAGACGAAAAGATTAACTCAAGACAAACCTTATGCATGTACAACTTGCCACAAAACATTCTCTCGTAAAGAGCATTTGGACAATCATGTTCGGAGCCACACAGGAGAAACACCTTATagGTGTCAGTTTTGTGCGAAAACATTCACCCGTAAAGAGCATATGGTGAACCATGTCCGAAAGCACACCGGCGAGACCCCGCATCGATGCGACATTTGCAAGAAAAGCTTCACTAGAAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCATACAAACGATACACCGTTCCGATGCGAATTGTGCGGCAAGTCGTTCACAAGAAAGGAACACTACACCAATCACATATTGTGGCATACGGGCGAGACGCCGCATCGGTGTGACTTCTGTTCGAAGACATTCACACGCAAAGAGCACCTGCTGAACCACGTGCGGCAGCATACGGGCGAGTCACCGCACCGCTGCAGCTTCTGCTCAAAGTCTTTCACTAGGCGGGAACACCTCGTCAACCATGTGCGTCAGCACACCGGCGAGACACCTTTCCAGTGCGGCTACTGCCCTAAAGCATTTACACGGAAAGACCACTTAGTTAATCACGTCCGTCAACATACGGGCGAATCGCCCCACAAATGTTCGTTTTGTACGAAATCTTTTACGCGCAAGGAGCATCTGACAAACCATGTGCGCCAGCACACGGGCGAGTCACCGCACCGCTGCACCTACTGCGCCAAGTCATTCACCAGGAAGGAGCATCTAACTAACCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCCCACGGGCCTTCTCGCGCAAGGAGCACCTCATCAACCACGTGCGACAGCATACCGGCGACACGCCGCACTcttgctcctattgcagcaagAGATTTACGCGCAAGGAGCACCTCGTCAACCACGTCCGGCAACATACAGGCGAAACGCCGTTCAAATGCACGTACTGTACGAAGGCGTTCTCTCGTAAGGAGCATCTGACGAACCACGTTCACCTGCACACTGGTGAAACGCCTCATAAGTGCCCATTCTGCACCAAAACTTACTCAAGGAAAGAACATTTAACCAACCATGTCAGGATTCATACCGGAGAATCTCCGCACCGCTGTGAGTTCTGCGAGAAGACATTCACGAGGAAGGAGCATCTCATTAACCATTTGAAACAACACACAGGGGATACACCACATGCATGTAAAATTTGCTCCAAACCATTTACAAGGAAGGAACATCTAATAACACACATGAGAGCACATAATTGCGGTGAACGGCCGTTCAGCTGCGGAGAGTGCGGCAAGTCATTCCCGTTAAAAGGAAACTTGCTGTTTCATGAAAGGTCGCATCAAAAAAGTGGCGGTGGGAACAGACCGTTTAGGTGTGAAATTTGCTCCAAGGATTTCATTTGTAAagGGCATTTGGTGTCGCATCAACGTACTCACGCGTCTACGGGCGAGACCGTCGCCAATAGCGAGCAGCAGGCGCCTGAAGGCGAACAATGCGGCGATTGTGACAAGGATTCTGCCGACCGCCCCGAACGAAAGCATGACATCAGagCAACTACTGATAGTAGACCAACAGAAGAAGATGTCACCCAAAACCAGCAAAGTAACTCTGTTATGCAAATGAACAGTCAAGTGCGATCTGGATCTGGTTCGGGTGCGGCCAGTGTGACCACATTCAACCACCCTCCAAGCACCCAGCACCACGCTGGCAACGCGATCGCTCATCATCCAGTCACCGTGAACTACTAG
Protein Sequence: AISEVDVEPGTSAPISESDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAVELSRHGKCHLAGDSTERQTKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLINHVRQHTGDTPHSCSYCSKRFTRKEHLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHVHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEFCEKTFTRKEHLINHLKQHTGDTPHACKICSKPFTRKEHLITHMRAHNCGERPFSCGECGKSFPLKGNLLFHERSHQKSGGGNRPFRCEICSKDFICKGHLVSHQRTHASTGETVANSEQQAPEGEQCGDCDKDSADRPERKHDIRATTDSRPTEEDVTQNQQSNSVMQMNSQVRSGSGSGAASVTTFNHPPSTQHHAGNAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01130179;
90% Identity: iTF_01130179;
80% Identity: iTF_01130179;