Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01004450.1:2048-13947[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.3 8.3e+02 0.9 0.1 19 26 27 34 21 39 0.88

2 19 2.1 5.8e+03 -1.8 0.0 18 28 54 64 49 71 0.77

3 19 0.012 34 5.3 1.6 16 30 93 108 83 117 0.74

4 19 0.0038 10 6.9 2.7 6 38 112 144 108 145 0.75

5 19 0.014 38 5.1 3.1 5 34 139 164 137 178 0.81

6 19 0.001 2.9 8.7 5.9 17 38 178 200 163 204 0.87

7 19 0.0071 20 6.1 1.2 15 33 204 223 200 228 0.78

8 19 0.012 34 5.3 1.8 14 33 231 251 219 257 0.71

9 19 0.042 1.2e+02 3.6 3.2 5 38 251 284 247 285 0.78

10 19 0.00062 1.7 9.5 1.1 5 38 279 312 276 318 0.85

11 19 0.036 99 3.8 5.5 13 38 314 340 307 346 0.80

12 19 0.014 40 5.1 6.5 13 38 342 368 335 375 0.80

13 19 0.017 46 4.9 3.2 11 38 369 396 363 397 0.72

14 19 0.05 1.4e+02 3.4 4.3 7 38 393 424 391 425 0.75

15 19 0.0013 3.5 8.5 3.5 5 33 419 447 416 452 0.82

16 19 0.0017 4.8 8.0 2.8 6 33 448 475 447 480 0.76

17 19 0.00017 0.47 11.2 3.4 6 38 476 508 475 511 0.83

18 19 0.0021 5.9 7.7 0.8 18 38 515 536 509 536 0.90

19 19 2.3 6.5e+03 -2.0 1.0 18 26 576 584 575 597 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.3	8.3e+02	0.9	0.1	19	26	27	34	21	39	0.88
2	19	2.1	5.8e+03	-1.8	0.0	18	28	54	64	49	71	0.77
3	19	0.012	34	5.3	1.6	16	30	93	108	83	117	0.74
4	19	0.0038	10	6.9	2.7	6	38	112	144	108	145	0.75
5	19	0.014	38	5.1	3.1	5	34	139	164	137	178	0.81
6	19	0.001	2.9	8.7	5.9	17	38	178	200	163	204	0.87
7	19	0.0071	20	6.1	1.2	15	33	204	223	200	228	0.78
8	19	0.012	34	5.3	1.8	14	33	231	251	219	257	0.71
9	19	0.042	1.2e+02	3.6	3.2	5	38	251	284	247	285	0.78
10	19	0.00062	1.7	9.5	1.1	5	38	279	312	276	318	0.85
11	19	0.036	99	3.8	5.5	13	38	314	340	307	346	0.80
12	19	0.014	40	5.1	6.5	13	38	342	368	335	375	0.80
13	19	0.017	46	4.9	3.2	11	38	369	396	363	397	0.72
14	19	0.05	1.4e+02	3.4	4.3	7	38	393	424	391	425	0.75
15	19	0.0013	3.5	8.5	3.5	5	33	419	447	416	452	0.82
16	19	0.0017	4.8	8.0	2.8	6	33	448	475	447	480	0.76
17	19	0.00017	0.47	11.2	3.4	6	38	476	508	475	511	0.83
18	19	0.0021	5.9	7.7	0.8	18	38	515	536	509	536	0.90
19	19	2.3	6.5e+03	-2.0	1.0	18	26	576	584	575	597	0.76

Sequence Information

Coding Sequence: GCTATAAGTGAAGTGGATGTTGAACCAGGAACAAGTGCACCCATATCAGAATCAGATTCGTCCCCGGGTCATCATTCCTGTGATATTTgtggaaaaatatttcaattccgTTACCAATTAATTGTTCACAGACGATACCATGGTGAAAGCAAGCCATACACTTGTCAAGTTTGTGGCACTGCTTTTGCAAATGCTGTGGAGCTGTCTAGACACGGAAAATGTCATTtagcTGGAGATTCTACAGAGAGACAGACGAAAAGATTAACTCAAGACAAACCTTATGCATGTACAACTTGCCACAAAACATTCTCTCGTAAAGAGCATTTGGACAATCATGTTCGGAGCCACACAGGAGAAACACCTTATagGTGTCAGTTTTGTGCGAAAACATTCACCCGTAAAGAGCATATGGTGAACCATGTCCGAAAGCACACCGGCGAGACCCCGCATCGATGCGACATTTGCAAGAAAAGCTTCACTAGAAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCATACAAACGATACACCGTTCCGATGCGAATTGTGCGGCAAGTCGTTCACAAGAAAGGAACACTACACCAATCACATATTGTGGCATACGGGCGAGACGCCGCATCGGTGTGACTTCTGTTCGAAGACATTCACACGCAAAGAGCACCTGCTGAACCACGTGCGGCAGCATACGGGCGAGTCACCGCACCGCTGCAGCTTCTGCTCAAAGTCTTTCACTAGGCGGGAACACCTCGTCAACCATGTGCGTCAGCACACCGGCGAGACACCTTTCCAGTGCGGCTACTGCCCTAAAGCATTTACACGGAAAGACCACTTAGTTAATCACGTCCGTCAACATACGGGCGAATCGCCCCACAAATGTTCGTTTTGTACGAAATCTTTTACGCGCAAGGAGCATCTGACAAACCATGTGCGCCAGCACACGGGCGAGTCACCGCACCGCTGCACCTACTGCGCCAAGTCATTCACCAGGAAGGAGCATCTAACTAACCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCCCACGGGCCTTCTCGCGCAAGGAGCACCTCATCAACCACGTGCGACAGCATACCGGCGACACGCCGCACTcttgctcctattgcagcaagAGATTTACGCGCAAGGAGCACCTCGTCAACCACGTCCGGCAACATACAGGCGAAACGCCGTTCAAATGCACGTACTGTACGAAGGCGTTCTCTCGTAAGGAGCATCTGACGAACCACGTTCACCTGCACACTGGTGAAACGCCTCATAAGTGCCCATTCTGCACCAAAACTTACTCAAGGAAAGAACATTTAACCAACCATGTCAGGATTCATACCGGAGAATCTCCGCACCGCTGTGAGTTCTGCGAGAAGACATTCACGAGGAAGGAGCATCTCATTAACCATTTGAAACAACACACAGGGGATACACCACATGCATGTAAAATTTGCTCCAAACCATTTACAAGGAAGGAACATCTAATAACACACATGAGAGCACATAATTGCGGTGAACGGCCGTTCAGCTGCGGAGAGTGCGGCAAGTCATTCCCGTTAAAAGGAAACTTGCTGTTTCATGAAAGGTCGCATCAAAAAAGTGGCGGTGGGAACAGACCGTTTAGGTGTGAAATTTGCTCCAAGGATTTCATTTGTAAagGGCATTTGGTGTCGCATCAACGTACTCACGCGTCTACGGGCGAGACCGTCGCCAATAGCGAGCAGCAGGCGCCTGAAGGCGAACAATGCGGCGATTGTGACAAGGATTCTGCCGACCGCCCCGAACGAAAGCATGACATCAGagCAACTACTGATAGTAGACCAACAGAAGAAGATGTCACCCAAAACCAGCAAAGTAACTCTGTTATGCAAATGAACAGTCAAGTGCGATCTGGATCTGGTTCGGGTGCGGCCAGTGTGACCACATTCAACCACCCTCCAAGCACCCAGCACCACGCTGGCAACGCGATCGCTCATCATCCAGTCACCGTGAACTACTAG
Protein Sequence: AISEVDVEPGTSAPISESDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAVELSRHGKCHLAGDSTERQTKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLINHVRQHTGDTPHSCSYCSKRFTRKEHLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHVHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEFCEKTFTRKEHLINHLKQHTGDTPHACKICSKPFTRKEHLITHMRAHNCGERPFSCGECGKSFPLKGNLLFHERSHQKSGGGNRPFRCEICSKDFICKGHLVSHQRTHASTGETVANSEQQAPEGEQCGDCDKDSADRPERKHDIRATTDSRPTEEDVTQNQQSNSVMQMNSQVRSGSGSGAASVTTFNHPPSTQHHAGNAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01130181;
90% Identity: iTF_01130181;
80% Identity: iTF_01130181;