Pkot006496.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- egg
- Assembly
- GCA_018246255.1
- Location
- DWLS01003330.1:2415-15967[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6 2e+04 -4.0 0.0 31 38 633 640 627 641 0.82 2 2 2.5e-12 1.1e-08 35.3 0.0 4 73 672 734 669 737 0.87
Sequence Information
- Coding Sequence
- GTGTTTCGATGGCACAAAGAGTTTAAGGAGGGGCGTGAAAGCGTGGACGACGTGGCGCGGAGTGGAAGACCAGTCGAGGTGCGGACTGACGCGAATGCGCAGCGTGTTCGCGCATTAATCCGTGAAGATCGGCGTTTAACAGTTCGAATGTTGGCCTCGGAACTGAGTATGAACCGTGAAACAGTCAGACAAATTTTAACCTACGATTTTGGGATGAAAAAGTTGTGCGCGGAGATGGTTCCAAAGAACCTTTCTGAGGAGCAAAAGCAGCATCGAATGACCGTCGCAGAAGACTGTTTGGAACAAGTGGAAAACAATCCCACGCTGCTTGATCGAGTTATTACAGGCGATGAGAGCTGGTTTTTCCAATACGACCCGAAAACCAAACGCCAAAGCTCACAATGGTTGTCTCCGCGCGCCCCCCGCCCGAAAAAAGCTCGCATGAGTTTGACTGTACTCGAAAGATTGCGAAAACGAGTCAACAGGGTGCACCCAGACATCGCTCATAACTGGATCCTTTATCACGACAACGCGCCGTGCCACACCGCCCTCAGCGTGTCCCAGTATTTGGCCTCTAAAGGGATCGCCGTGTTGCAACAGCCGCCTTATTCGCCCGACATGTCACCCTgtgacttttttatatttcctaaAACAAAATCGGTGGTAAAAGGAACCCATTTTGAGTCGATCACGGACATCCTGCTGGCCGTGACGAGGGTACTCGCGGACATCCCTGTCGAAGCGTTCCAGAAATGTTACGAAGCATGGAAAAAGCGCTGGAATCGCTGTATAGCTGCCCAAGGGGACTACTTTGAAGGGGATGCCAGAaaaACAGAAAAACGTACGAGTAAACGAAAGTCCGTCGTTAATGACATTCCCGCCAAAAAGCTCGCAATTGCAAATTCAAAAAACTCGGAGAACGCTAAACATGTGCAGAATGTAGACGTGTCCGTGGTGAAACTATCCGTAGAGTCAGCACCAGCCGATTTACCTCAACCGGGTGAAGTTGTCAAGCCACCACTGCGAACCGGTATGACGGTGTACGCTATGAAAAACAACTTCGGCATTTGGCTTAAAGCTAGGATTGTGGAAATCCAAATTAAGAACCCTtcatCATCACCGTTCACAATGTGTCGCTTGAAGTTTGAACACAAAGTGGTCAGGAACGCATTTATAACCTTACCAGCGCGATGCATTGCTTTTGAAGACCCACCCGATGTCCGACTTACCATAGGTACTAGAGTAATTGCATCCTCTGAAAAAAACGGGTCATTTTATTCAGGAGTTGTAGCCGAAGTTCCTAATCCAGTAAATAATTACAGGTACTTAGTGTTTTTCGATGACGGCCATGCAAAATACGCGAGGCACATTAACACGCGCCTGGTGTGTGAATGCTCTCCGCTTGTGTGGGAAGAAGTGCATCCAAATTCTCGGGAATTCGTGCGTCAGTACTTACTGTCGTATCCTGAGCGGCCCATGGTTCGTCTACATCCGAACCAAAGCGTCAAAGCGGAATGGAACGGGAAATGGTGGCATTCGCGCGTTATAGAGGTGGACGCATCTCTAGCGCTGATCCTGCTCGCTGGAGATAGAATGGAATGGATATACCGAGGCTCCACACGCCTGGGTCCCTTATATCTTGAATTCCAGGCTGCGGAGCGGCAGAGGTCGAGACCTATGCCTCGTTCTGGACCACAGAATCGGACCAACGTGCCTTATGTCGAGTACACCCGTTACGACGAGCCTTCAAAACAGCAAACCTCATGTTCGGCACAACAAAATGATgAAATGCGTCGTCAGCGTGCCGTAGCCAAGAAGTCAACTGTTTCATCTCAACTACCTCTGTCTGTACCACCTGCACCACCGAATAATGCGGCCAACCTAGACAACATTACCAGCAGAGTTGTGTACTATACGCCGAAGAATGCAATTCGTCCCTACAAGATGGTCCCGCATCAGTGCGGACCTAAATGCAAGCGGACCGACGTGTTGGCACTGAAAGATCTTAGAACTTATAATCCATTAGCGAAACCGCTGCTCAGTGCATGGGAGAGGCAAATAGTCCGTTTCAAAGGTCACAAAGAAGTGATGTACCGGGCACCTTGTGGCCGTCGACTCCGCAACATGGAAGAGCTGCACCGGTACCTGCGCGCCGTGAAATCGGACATGCCTGTTGACCTGTTCGACTTCGGCCCCTCCACGCACTGTTTGGTCGAATTCGTGCTAAATAAATGCCTTGTTGGCAAAAagGATTTATCTCATGGTAAAGAAAACGTTCCGGTGCCATGTGTCAATTACTATGATGAATCATTGCCTGAGTTCTGCTCGTACAACACTGAGCGCACCCCCACAGCTGGAGTGCCGCTGAACCTTGACCCGGAGTTTCTGTGCGGCTGCGACTGCGACGACGACTGTCAGGATAAAACCAAATGTGCGTGTTGGAAGATGACGTTAGAGGGCGCACGAACAATTGGTCTAGAGGGTGACGTGGGCTACGTGTACCGGAGGTTGCCGGACCCGTTGCCGACGGGAATATATGAATGTAACTCTAggTGTAAATGCAAAAATACTTGCTTAAATCGTGTGGCGCAACATCCCTTGCAATTAAAGTTacaagtATTCAAAACTTTGAATCGTGGATGGGGCATAAGAGCTTTAAATGATGTACCGAAAGGCGCCTTCCTATGTGTATATGCCGGAAATTTACTTACCGACGCTACTGCAAATTTGGACGGGCTGAACGAAGGCGACGAGTATCTCGCAGAGCTGGATTACATTGAAGTAGTGGAGCAGATGAAAGAGGGCTACGAGGAAGATATCCCCGAGTCTCTGAAGGAGACTGCTAAGGACGGACTTTCTTCAGAGGAGTTCTCGGAAAATGAGGATTCGTCATCAGAAGAGGAAGATTTGAAAAACTCAAAAGACGAGAGAGACGACGACTTTCGACCTGGATACGTCGATGTTGGTCCCATAGAATTTAACAAGAGACTGCGCACGCGTGAGAAACGCAAGAAAGAAAAGCCAGATAATCCAAAGGAAGAAGACAGTACAGAAACAAATGATGTAAAATTAGAAATGAAGCAAGAAGAGAAACCGGAGGAGAATCTGCAAGAAATCCAACAAGAAAAAGAAGGAGAGAAAGAGAAGGACAACGGAGATGATGAATTCATAACGATTAGTGATGACGAAGAAGTGAGAGAGCCTTCGCGATTTACGGCACAAGCCGGAATGGATTCGAAGCAtctaatatcaaaatatagGTCAGTTCGTTCGTATTTCGGCAAGGACGAGGCTTGTTACATCATGGACGCTAAGGTCCAGGGCAACATCGGACGATATCTTAACCACTCGTGCTGCCCGAATGTATTCGTGCAGAACGTGTTTGTGGACACACACGACCCGCGTTTCCCGTGGGTGGCTTTCTTCGCGCTGTCTCACATACGCGCCGGCACCGAGCTCACGTGGAACTACAACTACGACGTCGGCTCCGTGCCAGGGAAGGTACTCTACTGCTACTGCGGCGCCGTCAACTGCAGGGGCAGACTGCTCTGA
- Protein Sequence
- VFRWHKEFKEGRESVDDVARSGRPVEVRTDANAQRVRALIREDRRLTVRMLASELSMNRETVRQILTYDFGMKKLCAEMVPKNLSEEQKQHRMTVAEDCLEQVENNPTLLDRVITGDESWFFQYDPKTKRQSSQWLSPRAPRPKKARMSLTVLERLRKRVNRVHPDIAHNWILYHDNAPCHTALSVSQYLASKGIAVLQQPPYSPDMSPCDFFIFPKTKSVVKGTHFESITDILLAVTRVLADIPVEAFQKCYEAWKKRWNRCIAAQGDYFEGDARKTEKRTSKRKSVVNDIPAKKLAIANSKNSENAKHVQNVDVSVVKLSVESAPADLPQPGEVVKPPLRTGMTVYAMKNNFGIWLKARIVEIQIKNPSSSPFTMCRLKFEHKVVRNAFITLPARCIAFEDPPDVRLTIGTRVIASSEKNGSFYSGVVAEVPNPVNNYRYLVFFDDGHAKYARHINTRLVCECSPLVWEEVHPNSREFVRQYLLSYPERPMVRLHPNQSVKAEWNGKWWHSRVIEVDASLALILLAGDRMEWIYRGSTRLGPLYLEFQAAERQRSRPMPRSGPQNRTNVPYVEYTRYDEPSKQQTSCSAQQNDEMRRQRAVAKKSTVSSQLPLSVPPAPPNNAANLDNITSRVVYYTPKNAIRPYKMVPHQCGPKCKRTDVLALKDLRTYNPLAKPLLSAWERQIVRFKGHKEVMYRAPCGRRLRNMEELHRYLRAVKSDMPVDLFDFGPSTHCLVEFVLNKCLVGKKDLSHGKENVPVPCVNYYDESLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCDDDCQDKTKCACWKMTLEGARTIGLEGDVGYVYRRLPDPLPTGIYECNSRCKCKNTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPKGAFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPESLKETAKDGLSSEEFSENEDSSSEEEDLKNSKDERDDDFRPGYVDVGPIEFNKRLRTREKRKKEKPDNPKEEDSTETNDVKLEMKQEEKPEENLQEIQQEKEGEKEKDNGDDEFITISDDEEVREPSRFTAQAGMDSKHLISKYRSVRSYFGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSHIRAGTELTWNYNYDVGSVPGKVLYCYCGAVNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -