Pkot006288.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01003186.1:6492-12018[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-11 7.2e-08 32.8 0.1 5 35 180 211 178 216 0.91
Sequence Information
- Coding Sequence
- ATGGATTCTATAAAAAGTGAAACGGTGGTGTTTGTGGGAAGATGTAAATGTTGTCTTAACGAAGGCGACTTGAAGAATCTGTGGACGCCGCATATGTATGAAGGGGGCCTCGAAATTTATGGACTGATGCTGTCGGAGTGTTTTGGTTTATCAtgGCAATTGCCTGAGGAAAATTTGCAATATTTGGAGATGATATGTGACTCCTGCATTGACCGGTTGAGAGATGCACTGGCATTTAAAAGGGAAGTGCTGGTGAGTGAGGAGGTGCTGCGTGAGCATCAGGACAAATtatttatttgtcCAACCGTTAAAATAGAGGAAGTACAGAATGAGGATAAAGAAGCCGAGTTTGCCGATGTTGAATACCTGGAGATAGACTGTGTTACTATGAAGGAAGAGAAGAATGATGATCTACTAATTAACGATTTATCTCAGAGTTCCGATGAACAAGCCCAGGAGAAACCGAAGAGGAAATGGCCGAAGAAGCTTCCAAAAGAGGACAGGAACAAAACATATAAGCAATACACAATAAAGCAGTTGAAGATGGCAATTGATGCGGTGGTCAGTAAGGAGATGTCGTGCAGCCACGCGGCGGAGATGTACGGCGTGCCGCGGAAGACGTTGTCAGCGAAGCTTCACAGTAGCATAATCAATAAAGAGGAGGACGACGACGATGCTGTCAAATTGATTGAACAAGAGAAACATTACAAACTGATAGAAGAAATTAAGACAATCCTCACTTACACAAATGCTATACCGTACAAAACGAAAGCGTCAAGGTACTACTGCGCTTATTGCTCCACGGATAGCCCTCACTTCGAGGATCCCGACGACCTAAGAACCCACACGAGAACGACCCACGTCAACGAGAGAACATCCGGCATAGACCAAATGATGAAACCCCAGTGGATGAATGAAGTACTCAAAATTGATATAAACAGCTTACACTGCACTATTTGCTGCACAATACTGCTGACGTGGAACGATATGTTCAGGCACCTCGAGAATGAACACCAAGTGTACCTCGACGAGGCCTACAACCGTGTCATACCGTACATACTGTCTAGTGACTTGAAATGTGCTTTATGCAACGAGTACTTCCCCAACTATCACAACCTGGACGGACACATGAATACACACTACAGCAGCTACATCTGCTATGAGTGTGGTGACACATTCCTGGCATCCAGCCGCCTGAACAAACACGTAGAGGTGCACAACGGCGGGAAATACCCTTGCGATGCGTGCGGTAAGGTTTTCCGGCTAAAGAAATACATGAAGAAGCATTACGACCTTGTGCACTGCCAGGAGCAGAAGATCAAGTGTCTATACTGCCCAGAGAGGTTTTACGGTACATACCAAAGGCATCAACATGTGGTGGAGAAGCACAACGAAAGGGTCAAAATAAACGCCTGCGAGATCTGTGGTAAAACTTTCGACTGGCAGCCTTACTATTCCGCTCATATGAGAAGAATACACGGAACAGAAAAAAACCACAAATGTAAGGAGTGTGGTAAAAAGTTCCTCATGAAGTACGAGCTGAGGAATCATAGCGTGAAGCACGAGACCGAGAGGAATTTTGTCTGTGATATATGCAGTGAgagatttaaaagtaaaccaAGTCTGGTAATGCTGAAACCGAAAAAGACCACAACACTCATAGAGCCTATATACGAAATGGCGCTGTCGCCTATATAA
- Protein Sequence
- MDSIKSETVVFVGRCKCCLNEGDLKNLWTPHMYEGGLEIYGLMLSECFGLSWQLPEENLQYLEMICDSCIDRLRDALAFKREVLVSEEVLREHQDKLFICPTVKIEEVQNEDKEAEFADVEYLEIDCVTMKEEKNDDLLINDLSQSSDEQAQEKPKRKWPKKLPKEDRNKTYKQYTIKQLKMAIDAVVSKEMSCSHAAEMYGVPRKTLSAKLHSSIINKEEDDDDAVKLIEQEKHYKLIEEIKTILTYTNAIPYKTKASRYYCAYCSTDSPHFEDPDDLRTHTRTTHVNERTSGIDQMMKPQWMNEVLKIDINSLHCTICCTILLTWNDMFRHLENEHQVYLDEAYNRVIPYILSSDLKCALCNEYFPNYHNLDGHMNTHYSSYICYECGDTFLASSRLNKHVEVHNGGKYPCDACGKVFRLKKYMKKHYDLVHCQEQKIKCLYCPERFYGTYQRHQHVVEKHNERVKINACEICGKTFDWQPYYSAHMRRIHGTEKNHKCKECGKKFLMKYELRNHSVKHETERNFVCDICSERFKSKPSLVMLKPKKTTTLIEPIYEMALSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00180394;
- 90% Identity
- iTF_01130398;
- 80% Identity
- iTF_01130398;