Pkot010127.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- ttk
- Assembly
- GCA_018246255.1
- Location
- DWLS01006278.1:2635-6587[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1 2.6e+03 -1.0 0.0 20 33 216 229 215 232 0.88 2 2 2.2e-16 5e-13 49.3 0.0 1 42 328 370 328 373 0.94
Sequence Information
- Coding Sequence
- ATGTCACAGCAATATAGCCTGCGGTGGAACAACCACCAGCCAAATTTCATATCAATGTTTACTACACTTTTAAATACGCAAACCCTTGTTGATGTGACTTTGGCGGCAGAGGGCAAACACCTACAAGCTCATAAAGTTGTCTTATCTGCCTGCAGTACCTACTTCCagGCCCTTTTTGTGGATAACCCCTCTCGGCATCCCATCGTAATTCTAAAAGATGTATCATTTTCTGACCTACGCATAATGGtagattttatgtattatggtGAAGTAAATGTAACTGAGGAGCAATTACCCCAAGTCCTTGATACGGCaaaattgttgaaaataaaGGGTTTGACAGAGATGCCAGACTCAACATCTCTTACACGCTCTCAAGGAACATCCGCAGACTTCCAGTCACCTGGAGATTCAATAGATTCTCAGAGACATTCTACATCTCCTGTACCGTCACCTTCAAACAAACGTAAAAAACGCCGTAAAAGTTCAACAGGTTCAACATCATTAAATATGTTGTCAGAAGATAACAGAAATGATGATGCAGGACAGTCTGTTGACCTGGTTCGAGGTGATACAATTACATTAAGCAGTCTCCCACAGCAAAGACGTATGAGAGATTATCAGGATGAAAGAATAGATGCTGCTCAACAGGCTGCTGATCAACACAATCTTAGTGTGGATACTTTAACAATGGATAATAACCCAGCGGGAATCCCACAAgGAGGCCAATGGAGTATGATGGAGCACACATACCCTCGTTACTCGAATGCCTGCATCGGAGGAGGCGGTCTCCAACCGGATCACGGCATGTACATTAATAACGTCATAAACCCGCATATGGAATCAGATATGAGCGATTATGGGCAAGGCTTAGGAGTGACCGGACCCTCGCCCGGCCCCAGTTGTGTTGCAGAACCACAAACTGCTCAAGAAGTGGTACCACAGACTCAAACTAAGCGTCGCCGGACGACAAATCCGCAGTCCGAAGAGAACTTCCAACGTGCACTTGAAGCCGTCCGTTTCGGTGGGATCGGTTTTTGTAAAGCAGCACGAATGTTCGGAGTAAACAATAGGACATTGTGGCTCGAGTACAAAAAGAAGGGATATCCGAACAATCGACCAAGCATCAAGAGTAGGATAAAACGCGAGCACACTTCTCCTCCACCCGAACCGAAAGAAGAAATTCCGCAACCTGAGCAACAGATGGCACTTATATGCCCACCACATCCGGTTCCCGTGAGTTTTATAGACTCAAGACCGATTGACTTCCCATTGCAGGGAGTACCACACAACTCACCCTTGAACATTCTCGGAATGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVSFSDLRIMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQGTSADFQSPGDSIDSQRHSTSPVPSPSNKRKKRRKSSTGSTSLNMLSEDNRNDDAGQSVDLVRGDTITLSSLPQQRRMRDYQDERIDAAQQAADQHNLSVDTLTMDNNPAGIPQGGQWSMMEHTYPRYSNACIGGGGLQPDHGMYINNVINPHMESDMSDYGQGLGVTGPSPGPSCVAEPQTAQEVVPQTQTKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTSPPPEPKEEIPQPEQQMALICPPHPVPVSFIDSRPIDFPLQGVPHNSPLNILGMNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364840;
- 90% Identity
- iTF_01159530;
- 80% Identity
- iTF_01130119;