Oarm004209.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- Trl
- Assembly
- GCA_958009045.1
- Location
- OY253746.1:697932-699414[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-20 5.6e-16 58.6 0.1 16 50 11 45 2 54 0.87
Sequence Information
- Coding Sequence
- ATGAGAAGTAAACGACAGAGTGACGGTTCCAAGGGTCGTAGCATATCCGATCAACCGACCACTTGTCCACTTTGCGGTGCGATACTACGTCAATCGAGAAATTTACGTCGTCATCTGGAACTTCTTCATTTTGGTCTTGGTAACAGTGGTAAACCGGGTATACGGGTTAAACGTCGAAAATCTGACAGACTTACCGATTATCATCGACCATCATTGGCAACCGTACGACCAGCACACCCCTTACATCCGCATCATACAATGAGAACGTCGGAAAATTCCGATTTCTCAACACCGGTACCACTATCATTGGCTTCGGCGGTCAGCTCCGTTGCTTCGAATCTCAGTCTTCCAGgaaatctaATGCCACCGGGTTCAAGTATGCTCGGTCAGGATCCGAGTACTCATATGATACCGGGCATACCGTCAAGTTCTTGCGGCACAACAATGCCCGGGCCATCGAACAATGGAATTTACTCGTCCGACAGTGGCGCAAGTATGCTCAGTTGTTTATTGCCGAATTTACCGTCACTTCCGTCGCCACACGATGTCTTTCGTCACGGTGAAATGTTACGCGGTATGGCTTATCACGATACATCGAGACAACACGCGAGACACATGCAACGCACCGACGTTACGTAA
- Protein Sequence
- MRSKRQSDGSKGRSISDQPTTCPLCGAILRQSRNLRRHLELLHFGLGNSGKPGIRVKRRKSDRLTDYHRPSLATVRPAHPLHPHHTMRTSENSDFSTPVPLSLASAVSSVASNLSLPGNLMPPGSSMLGQDPSTHMIPGIPSSSCGTTMPGPSNNGIYSSDSGASMLSCLLPNLPSLPSPHDVFRHGEMLRGMAYHDTSRQHARHMQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439877; iTF_00829901; iTF_01058033; iTF_01056459; iTF_01057304; iTF_01299672; iTF_00266849; iTF_00266119; iTF_00263017; iTF_00263941; iTF_01306904; iTF_00798943;
- 90% Identity
- iTF_00798943;
- 80% Identity
- -