Oarm002372.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958009045.1
- Location
- OY253745.1:4263384-4267387[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-116 5.8e-112 374.1 30.2 1 300 29 326 29 326 0.96 2 3 0.0035 72 2.7 2.6 122 172 326 376 324 383 0.90 3 3 0.044 9.2e+02 -0.9 5.5 194 238 357 400 345 401 0.58
Sequence Information
- Coding Sequence
- atggaGTCAACTATAGCGGGACGAAGGCGTAACGCTACGAGGCATTCTGCCGAGGATCAGGCGCTCGACCAGATAGCCAAAGAGGCTGAAGCGAGGTTGGCTGCGCGTAGACAGGCTCGTGCTGAGGCTCGTGAAATTCGTATGCGAGAATTGGAGAGACAACAAAAAGAAGCAGAGGAGAATGCTGATAGAGTTTACGATATGTGCTCAGAAGGGAACAGAACAATGAGAGTCACGCCAGATCCCGTGAGGACATCACGTATGCTCGCAAATTCGAATAATTTTCAGTCAAGCAGAAGATCGTCCGAGGATTCATTGGAAGACGCTGGACTAAGCAGAGATCttagaTTAGAGCTCAAagaattcgaagaaaaatttagAAAAGCAATGATAGCAAATGCCCAGTTGgacaatgaaaaatcatcgtacGGATATCAAGTCGATTTGTTAAAAGACAAGCTGGAAGAATTGGACGAGACAACCGCACAGCTGAGACGCGAGCTtagagaaaagaatagagaggCCGAACAGCTTAAACGTACGAGTCAACGTTTAAAGGAAGATTTTGAAGTGTGTAGAGCTGAATTGTTAGAGAGGGACACGCTTATTCagGAAAATGGGCTGGTCATAGTGGACGATGAGGGTAACGGTGACGAAGACGCGGAAACGGCAAATGGATCTTGTTACGGGAAAAGGGTACTAGTCAGCACAGAAGCTGCCGAGCTATTACAAAATGCTGGTGAAGGCTCGTTAGACGTTCGATTGAGAAAATTTGCTTCCGAAAAGAAGGAATTACAAGATGAAATTGGACACTTGAGGTTGGAGTTGGAGGAAGCGAAGAGTCGTCTGAGATCGGAAAAAACACCAGGTTCCGTATTAGGCGGATTCTCTGATTCTGAGGACGTGCAGAGAGAAGCGAACAAATTATTGGCGGATTATAAATTTAAATTGCAAAAAGCTGAACAGGACATGTCCACGTTACAGGCCACTGTTGCGAGGCTCGAGAGTCAAGTTATACGTTACAAATCGGCAGCTGAAGCATCGGAAAAAGCGGAGGACGAACTGAAAGTTGAAAAGAGAAAACTGCAGAGAGAAGTGCGCGAATCGCAAGGTCGCGTCGAGGAACTTGAAACGGCAAACTCCCACTTACAGAGACGATTGGACAAGCTAAAAAATGCCAAGTCCGCACTTCTCAAAGAGCTCTGA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSEGNRTMRVTPDPVRTSRMLANSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYGYQVDLLKDKLEELDETTAQLRRELREKNREAEQLKRTSQRLKEDFEVCRAELLERDTLIQENGLVIVDDEGNGDEDAETANGSCYGKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKTPGSVLGGFSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -