Basic Information

Insect: Oxystoma pomonae
Gene Symbol: -
Assembly: GCA_963921995.1
Location: OY998165.1:104168402-104191956[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00071 7.9 8.0 0.0 20 46 267 293 264 300 0.87

2 4 0.0011 12 7.4 0.0 23 44 326 347 320 355 0.84

3 4 0.12 1.4e+03 0.8 0.0 26 44 385 403 375 409 0.88

4 4 0.0002 2.3 9.7 0.3 25 49 412 436 407 440 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00071	7.9	8.0	0.0	20	46	267	293	264	300	0.87
2	4	0.0011	12	7.4	0.0	23	44	326	347	320	355	0.84
3	4	0.12	1.4e+03	0.8	0.0	26	44	385	403	375	409	0.88
4	4	0.0002	2.3	9.7	0.3	25	49	412	436	407	440	0.88

Sequence Information

Coding Sequence: ATGCAGGAAAATGTTTGCCCTCAGTGCGACAAAGAAGTGTTACCTCCTTTGAATCGGTTAGTCCAAGATGCTTGTGGTCACAAGAAATGCAGATGCTGCCTTTTGGAAGATGAAATAGGATGCAAACAATGCCAAATCTTAAACGGCGATAacaacattttgaaaactgtgGGGTTGGACAAGCATAATGACCATACTCCAACAGCAGCGCTGAAAAATATGCAAACTGTAAACCATATTTGTCCCACTCTTACAACCACAGTTAAACCAATTGAAAATCACACAGCCGTAATACAGTGCAATGGAAAGCCAAAAGTCTCTTTAGATAAAGTTTGCTATGGCAAGAGCTCATTTCAAGAAGTTCCAATTAAAGAGGAACCCAAAGAAGTTTTTCCAACGGGGAAACTAGAAAATAGATCTCCTACCAAAGCACCTGTTGCCGATAGAATAGATTCTACCCCTAAAGAGAAATCAGCAGTTACCAATCAACCGAAAGGGCAAGATTTTAAAATACCCTCGATTGTAGATTTTAAACAGAAAACTATGAAAAAAGAGTTTAATGTACAAACCCAATTAAAGCCtggaaagaaaaaacaaaatatggaGATACCTGATCATATTACTGTTTCTACTGAACCACTTTCTTTCCATTGCAATTTATGTAATAAGAGTTTTAAGACTAAGGGACATGTGAAGTATCATAGGTTTTGTACAGGAGAAGTCCCACCACACAAATGTTCGCTTTGTGGCAAggattttattctaaaaaccCAGCTAGAACTTCACTTGATAAAGCACCGAAAAGAAAAGCCCCAAACTTGCGGTATCTGTCAAAAATCGTTCTACGAAGTGAGCAAACTAAAGCGGCACGTGCAAGTGCATAGCGAagagaaaaaatttatgtgTTCCGAGTGTGGAAAGACCTATAGAACCAAGGAGGCACTCCACATACATTTTTCCATACATAAAGGAGAGAAACTGTTTGGCTGTCATTTGTGTGAAGCAAAATTTAACAACTCGTCGAATCTGAAAAGGCATCTTGTTACTCACTCAAcaaTGAAGGGTCATATGTGTGATCTTTGTGGAAAAACGTTTAAACTAAAATGGGCTTTGAAAGTGCACAGAAAATCACACACAAGGATGAGAGATTATCAGTGTGATGTCTGCTTTAAAACATTTGTTCTTAATAAAGAACTACAGAGGCATCTTCTTACACACGATGACTCTACAAGTTACACCTGCAGTATATGTCGCACCGCATTTCGTCGGAAGGACAACCTTTACCGGCACATGAAAAACACCCACCCCGGCAAAAAAGCCGAGGTCATAGTGGATCGACATTCACGACCTAAAACCTTAGAAACCAAAGCGTCCGCTAGAGTGCCGGCAACTAAAAAGATCCCCGTCGTTGTGGATAATCCCAACGCTATCAACGTCATAACGGCGTCTCCTGCGTTCGTAAAAAGTAAGAACCTATCTGTCGCTCTGCCGCATGATGAATCAAACGTTGACATTGTTGATTCCAGGACCGTCGTCGGGACGTCAGGGTACAACGGACCGCCCAAGCTCGCGTTTAAAGGACCGGCTTTCAAGATGCATTACAATATTAAGAGAGACTGCGATTACATACATCCAACTCAAGTACCGCACCCGATAAATCTATCCGAATCCGTAGACATCTGTCAACAAATTATGTCGCCCAGCACAGACTACACCTGCCCGACAAGTCCCAACGTGGACGAAAGAACGTCCACCGAGatatgccaaaaaattttgtgtgttgACGGCCCAAAACCGGACCAAGCGAAGGTGACAGAATCTGAATATCAAAACAGTGACTCCGTCTATGAATTTGAACATGGAATTAAACCTGAACCAGGACTAGAAGCAGATCTTGTAATTGAAGAAACTGAAATCGATTTATTGTCACCATGCTCACAGTATGGTGATCCAGTAAGAACTGGAAACGACGAATCATTAAAAGAAACCTGTCAAAGTCCGACTCGGGAAATTTTCGGCATACAGGCTCCCATTCCTATTAACTTGTCTGAGTCTgttaatatttatcaaaaaatcatgTCGCCAAGTACAGATTTTACCGACCCGACCAAAAACGTAGACGAACTGACTTTTAAAGAGATTTGCCAAAGGATTTTGTCACCTCCGCCAGAAATATTGCACGCGCAAAATGATGACgggaaaacttttaaagaagctCGTCAGCCGATTTTGTCTATTTCCAATAGTCCACCACCATTGCCTACGCCTATACAATTGTCAGAATCTGttaacatttatcaaaaaataatgtcGCCCAGTACAGATTATACAGATCCTACAAAAACCGTTGACGAAAGAACGTTTAAAGAAACTTGCCAGAAAATACTGTCAATTTCTAACGATCCACCAGATAATTCCTACGACAATAATTTATCTGTTCCAAACAGGACTCCCTTGCGAAACGTTCCCTCGCcttattttagcaatttttctagTCCTCGTTCCGATTTTAGTCAGTATTCAAGTCCGGGGCCGAGCCCCAGGCCTGGTTTACCTCAGTACTCTAATACATTACATTACGCGTCAtcatttcaaaatcaaaaacacgCCGTAATTAAAAGTATCAAATTTAAGGTGCCTCGAGAGTATACGAAAACGTTTAAGGAACAACAGCAGGAGAGGCAAGACTTTAGGgacgattttcataaaaatttgcaatgttCTCTAAAGCCAGCCAGTGTCATTGTTAGTAATAAGAATACTAAAGATATTGAATATACAGGTGACTGA
Protein Sequence: MQENVCPQCDKEVLPPLNRLVQDACGHKKCRCCLLEDEIGCKQCQILNGDNNILKTVGLDKHNDHTPTAALKNMQTVNHICPTLTTTVKPIENHTAVIQCNGKPKVSLDKVCYGKSSFQEVPIKEEPKEVFPTGKLENRSPTKAPVADRIDSTPKEKSAVTNQPKGQDFKIPSIVDFKQKTMKKEFNVQTQLKPGKKKQNMEIPDHITVSTEPLSFHCNLCNKSFKTKGHVKYHRFCTGEVPPHKCSLCGKDFILKTQLELHLIKHRKEKPQTCGICQKSFYEVSKLKRHVQVHSEEKKFMCSECGKTYRTKEALHIHFSIHKGEKLFGCHLCEAKFNNSSNLKRHLVTHSTMKGHMCDLCGKTFKLKWALKVHRKSHTRMRDYQCDVCFKTFVLNKELQRHLLTHDDSTSYTCSICRTAFRRKDNLYRHMKNTHPGKKAEVIVDRHSRPKTLETKASARVPATKKIPVVVDNPNAINVITASPAFVKSKNLSVALPHDESNVDIVDSRTVVGTSGYNGPPKLAFKGPAFKMHYNIKRDCDYIHPTQVPHPINLSESVDICQQIMSPSTDYTCPTSPNVDERTSTEICQKILCVDGPKPDQAKVTESEYQNSDSVYEFEHGIKPEPGLEADLVIEETEIDLLSPCSQYGDPVRTGNDESLKETCQSPTREIFGIQAPIPINLSESVNIYQKIMSPSTDFTDPTKNVDELTFKEICQRILSPPPEILHAQNDDGKTFKEARQPILSISNSPPPLPTPIQLSESVNIYQKIMSPSTDYTDPTKTVDERTFKETCQKILSISNDPPDNSYDNNLSVPNRTPLRNVPSPYFSNFSSPRSDFSQYSSPGPSPRPGLPQYSNTLHYASSFQNQKHAVIKSIKFKVPREYTKTFKEQQQERQDFRDDFHKNLQCSLKPASVIVSNKNTKDIEYTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01128763;
90% Identity: iTF_01128763;
80% Identity: iTF_01128763;