Opom035964.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- Hr39
- Assembly
- GCA_963921995.1
- Location
- OY998172.1:7364272-7406199[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.21 4.7e+03 -2.1 6.7 106 199 191 292 111 314 0.45 2 4 7.6e-09 0.00017 22.4 0.0 1 28 399 426 399 440 0.86 3 4 0.12 2.7e+03 -1.3 0.0 94 118 468 489 446 503 0.76 4 4 3.7e-72 8.2e-68 231.0 0.3 205 408 531 729 516 729 0.97
Sequence Information
- Coding Sequence
- ATGGCCAACGTTTCGGTCACGCCCATCAACATGGAACCTCCCTACGCCGCCGTGCTGACCAATCAGAGCAACGGAGGAGAGGCGGACTCGACGACGGCGGTTCCTCCGCGTAGTAGGAGCGCGCCTCATCCCGCGGCAGTGACGTTGAACGGTCTGCAAGAGGGGGGCGATGGTTTAGATGCCGAAGTGGCTCGTATCGAGTTTCAGTCGGTCAACATGAGGAATAAAGTGAAGAAGGAAGAATTGCCGAGGCCCATGAGTTGGGAGGGCGAGCTGAGTGACGGAGAGAGGGACGGAATGTGTATAGACGAAAGCAGCGAGGGCCCTCATTTGCCTGAAAACCTATCAGTGTCGGCGCCTAAACAAAACGCAACGTTAGATCTGAAAGATAGCCCTATACTGAGgTTAAAGCAACCTCCAATAGGCAACTATTCAATTCACAGCACACCATCCAACTCTCCTTTGCTCAGCCAAAGGCATCCTGTTACAGGGGCGCCTATTATTAGTCATAAGgatcTCATGCACAAGGCACTGAACGTACCACCGACCCCTTCACCCGACTCGGCCATCCACTCGGCCTACAGCGTGTTTAGCTCGCCCACGCAGAGCCCGCTGACGCAACGACACGTTAACTTGACGCCGAGCCTGAGCAGGAACAACTCGGACGCGTCGCACTCCAGCTGTTGCAGCTATTCCAGCGTGTCAGTGAGCGTTTCGCCCACGCAGCAGTTCAGTCCTACTCACAGCCCCATCCAGGGTCGCCATATACACGGAAACATCCACAGCAGTCCCCTGCACCACAACGTGTTATACAGGAGCCTCCAAGAGGACCACTTGGCTCAATCCCAGTACGCTTCGTCCGACCAAGACTCGTCGCATGGGGCCCTGTCTCTGACAGGGGACGACGCTGACGATAAGTCGAGCCTGTTGCATACGTCGTTGCCGGCGCAACCTGGGATTtctagacaGCAACTGATCAACAGCCCATGCCCGATCTGTGGCGACAAAATTTCCGGCTTTCATTATGGAATCTTTAGTTGTGAATCCTGCAAAGGCTTCTTTAAAAGGACCGTTCAAAATAGGAAAAACTACGTATGTCTGAGAGGTGCCCAGTGTCCCGTGACCGTTGCGACGAGAAAAAAATGTCCTGCCTGTAGATTTGACAAGTGTTTGCAGTGCGGCATGAAATTAGAAGCGATAAGAGAAGACCGCACGCGGGGAGGAAGATCGACCTATCAATGCTCCTATTCTTTGCCGCCATCTTTGGCTAATCAATCCGAACTGCGGGCCAGTTCCACGGACTTGAGGCAAGGATACGGAGATCATTATACCGGGTTTGCGGTTAAGTTGGAGCCGTTCGAAGGACCTCCGCCGCAACATAGTAGAAGAGGACCCGTGCCCGGGTCGAAGGGTGTCCCTCCATTATTGCAGgAAATAATGGACGTGGAACACCTGTGGCATTACAACGAATCCGAACTGAACAAGCTGAACGCCGACGGCCATTTGGGCAAGGAGGGTGGTAGCGGTGCCGTCCATAACCTTTCGAACCACCCCTTGCTCGCTGGTACCGCTTTGGCCGGTTCCGCGGACACCAATCCTGATTATGTAGCAAAACTGTGCAATATCGCCGACCATAGGCTTTACAAAATCGTCAAATGGTGTAAAAGTCTTCCGTTATTTAAGAATATTTCGaTCGATGACCAAATCGCGCTCCTAATCAACTCGTGGTGCGAGTTGCTCCTATTTTCGTGTTGCTATCGGTCGATGGACACGCCGGGAGAGATCAAAATATCGCTGGGGAAAAGCATCAACTTGCAGCAGGCGCGAGAAATGGGCATGCAGGCGTGCATAGAGCGCATGTTGAATTTCACCGAGCAATTGAGGCGACTGAAAGTCGATCAGTACGAGTACGTCTCGATGAAGGTTATTTTGTTGTTAACGTCTGataCATCCGAATTGAAAGAAGCAGAAAAAGTACGGGCGTCTCAAGAAAAAGCGTTAAACGCTTTGCAAGACTATATTTTGCACCACTATCCCGAGAGCCCCGCCAAATTTGGAGAACTTCTTTTACGGGTACCCGAACTACAACGAACTTGCCAAgTTGGCAAAGAAATGCTTACAATAAAGTCCAAGGACGGTGACGGACCCAGTTTTAATTTACTTATGGAACTATTAAGAGGCAATCACTGA
- Protein Sequence
- MANVSVTPINMEPPYAAVLTNQSNGGEADSTTAVPPRSRSAPHPAAVTLNGLQEGGDGLDAEVARIEFQSVNMRNKVKKEELPRPMSWEGELSDGERDGMCIDESSEGPHLPENLSVSAPKQNATLDLKDSPILRLKQPPIGNYSIHSTPSNSPLLSQRHPVTGAPIISHKDLMHKALNVPPTPSPDSAIHSAYSVFSSPTQSPLTQRHVNLTPSLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPIQGRHIHGNIHSSPLHHNVLYRSLQEDHLAQSQYASSDQDSSHGALSLTGDDADDKSSLLHTSLPAQPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLANQSELRASSTDLRQGYGDHYTGFAVKLEPFEGPPPQHSRRGPVPGSKGVPPLLQEIMDVEHLWHYNESELNKLNADGHLGKEGGSGAVHNLSNHPLLAGTALAGSADTNPDYVAKLCNIADHRLYKIVKWCKSLPLFKNISIDDQIALLINSWCELLLFSCCYRSMDTPGEIKISLGKSINLQQAREMGMQACIERMLNFTEQLRRLKVDQYEYVSMKVILLLTSDTSELKEAEKVRASQEKALNALQDYILHHYPESPAKFGELLLRVPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_01128615;
- 80% Identity
- iTF_01128615;