Opom006051.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963921995.1
- Location
- OY998164.1:15686678-15699746[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-109 2.6e-104 350.0 30.1 1 300 172 475 172 475 0.92 2 2 0.046 2e+03 -1.0 5.4 121 170 474 523 473 550 0.69
Sequence Information
- Coding Sequence
- atgagcGATAGTGACAGCGACTCTTTGCACAGTTGTGAAGAAACCtcaaatttaaatgaaaacaaatccACTCCATATGAACCAAACAATAATAGGTTAAAAGTTAAACGCGAGAGTGAATTGTCTTCTGGTGATGAAAATTTCGCCGAAAGCGATTTGATGCATTTGGAAATGCCTCGTAGTACCAAGGTTATGAAAATTGAGAGTTCGGAGTTAAATACCTTAAATATTCAAGACTCTCTAAATGTTGAAAGTCTTGATGATGGTATTTCAGACAAAGATATTATTGATGGTATTTCAGACTCAGATATTGTTGAAAATATCGCGGAACATAAATACTTGGATGACCCCGATGCCGATGGtcacaaaatattaaatcttgAGGGTGTCACTGTGTCCGAAACGTCGGATTTTGTGGATAGgcataattattataataaagaGTATTCGAGAAACAGCTCAATGAGTGATAGTGATGTTATCAATAGTTTTATGCAGAGTTCTTCAGATGAAGCGGAGGCGCGACTATGGGCCAAACGTCAAGCGCGAGCAGAGGCGCGCGAAATACGCATGCGCGAGTTGGAAAGACAGCAAAAAGAGCAAGAAGAAAATGCCGACCGCCAATTTGACATGATGGCATCGGTTGACACTCCGCCAGTGGCAGCTTTGGTCCGgACACCTAGATCAACGGTGGCTAGTACTACTGGGAGGTACCATTTGTCGAGTAGACGAAGTTCCGAAGATTCTCTTGAGGACTGTGGCAGTAGTTTGAGGGAAATGAGGACCAACGTGATATTGACTCAGCTAAATTTTCAGCACGAACTGAAAGAAGTAGAAGAGAAATTTCGGAAAGCTATGATAGCCAACGCTCAGCTGGACAATGACAAGGCTTCCCAGACGTATCAGCTGGAATTGTTAAAAGATAGgtTAGAAGAATTAGAAGAGGAGCATTCGCAGTTGAAAAGGGAACACAGGGATAAATGTAGAGAGCACGAGCAGCTTAAGAGGCTATGTGCCCAACTGAAGGATGAACTAGCGGCTATCAAATACGAGCTGGCAGAGAGAGACAGGCTCATAGAAGAGAAAGGCTTAGTAGTGGTGACGTGTGAAGACGAGACGGAAAACGGCGCGCCTCCTAGGAAAGCCTTAGTCTCGGCGGAAAACGCTAGGCTTTTAGAAACGGCCGGCGACGGTAGCTTAGaTGTTCGGCTGGAACGTTTCGCGAAGGAAAAAAGCGATCTCCAAGATCAAATTAGTCATTTAAAATTAGAGTTAGAAGAAGAAAGGAGTAGACGAAGGAAGTCCAGTAGTCTGTCGAATGGTCCTTTGTCAGAATATGACTTGGATGATGTCCAGAGAGAGGCCAGCAAGCAGCTCGCAGATTACAAATTCCGCGCCCAAAAGGCCGAGCAAGACGTGGCAACGCTGCAGGCCACCGTTGCCAGGTTAGAGAGTCAAGTCATTAGGTACAAAACTGCGTCGGAAATTTCGGAACAGAGCGAGGAGGCTCTGAAATcggaaaaaagaaaactgcaaAGAGAAgcaAGAGAAGCGCAGACTCGGGCAGAAGAACTGGAAACCTCAAATACACACCTGCTGAAAAGGTtagataagttaaaaaatgcgAAATCGGCGCTTTTGAAAGAGCTTTGA
- Protein Sequence
- MSDSDSDSLHSCEETSNLNENKSTPYEPNNNRLKVKRESELSSGDENFAESDLMHLEMPRSTKVMKIESSELNTLNIQDSLNVESLDDGISDKDIIDGISDSDIVENIAEHKYLDDPDADGHKILNLEGVTVSETSDFVDRHNYYNKEYSRNSSMSDSDVINSFMQSSSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMMASVDTPPVAALVRTPRSTVASTTGRYHLSSRRSSEDSLEDCGSSLREMRTNVILTQLNFQHELKEVEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLKREHRDKCREHEQLKRLCAQLKDELAAIKYELAERDRLIEEKGLVVVTCEDETENGAPPRKALVSAENARLLETAGDGSLDVRLERFAKEKSDLQDQISHLKLELEEERSRRRKSSSLSNGPLSEYDLDDVQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTASEISEQSEEALKSEKRKLQREAREAQTRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -