Basic Information

Insect: Oxystoma pomonae
Gene Symbol: JRK
Assembly: GCA_963921995.1
Location: OY998172.1:15403318-15405264[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.7e-09 2.3e-06 28.4 0.3 3 37 17 51 15 56 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.7e-09	2.3e-06	28.4	0.3	3	37	17	51	15	56	0.93

Sequence Information

Coding Sequence: ATGGTGCGAAAGTACACAAGAACAACAACTCGCCAAAGCTGGTCTGCAGAGTCGATGAAAGAAGCAGTACAAGCGGTTATTACAAGAACCATGGGTTATAAAAGAGCAGCGCAGCAGTTTAAAGTACCTCAAACGACATTGGAGCGTTATGTtgcaaaagcaaaaagagaaCAGGGGACAATGTTTACAGTCGCACATTTAGGAAGTGTCAGAAATGTGTTTACTGAAGATCAAGAGTTAGAGATTGTCAAGTATGTAAAGGATATGGAATCAAGGTTATTTGGCTTCACCATGACagaattaagaaaatttgtttaccAATTGGCGGTCGCAAATGGTGTTGCAAACAGGTTTAGTCAAGATACTCAAATGGCCGGTCCTGACTGGATGGAGCATTTTCTTCGAAAACACCCGActataactttaagaaaaccAGAAGCTACATCAGGAGCTCGAGCCATGGGATTCAACAAAGTAGCTGTAAATCAGTTTTTCGGTTTGCTTTTAAGTATTATAGATAAGTATCAATTATCCGCCGACAAAATTTATAATTGTGATGAGACAGGACTCACTGTAAATCCAAAAGGACATTCCAAGATACTGGCCCTTAAAGGTAAACGCCAAGTGGGTGTTCTCACGTCTGCAGATCGAGGTGAAACAGTAACTGTGGAAATTTGTTGCTCAGCTTCTGGAAGTTATTTTCCTCCCTGTCTCATTTTTCCCAGGAAAAGGAAGCGTCCAGAATTTGAACTTGGTTTGCCACCGGGGTGTATGGTCGAAACAAGTGAATCTGGTTGGGTgacaagtgacattttttttcgatggtttaaaaaatttgtgcaATTTTCTGGAGGTTCAAAAGATAACATCGTACTATTAATTTTCGATGGGCATGCTACGCATACGAAAAATCTGGACCTTATCAATTATGCCAAAGAGAATGGAGTGGTTCTGCTTTGTTTACCTCCTCACTGCTCGCATAAACTTCAGCCACTTGACGTTGGATTTATGAAACCTCTCAGTACCTACTACGAGAATGAGGTAAGAGTTTGGTTACGAAGTAATCCTGGAAAAGTAGTAACACTTTGGCAAATATCGTCTCTTTTTGGCGCTGCCTATATCAACACAGCAACGATGAAAAATGCTATGAATGCtttcaaaaaaactggaatttggcccccgaatcaaaatatttttgaagatagtGACTATCTACCAGCGTCTACGACCGATATTCCCATAAACAATGAAGCCGATGAGGCCTATACCCAGACTAATCAACAAGATGAACAGCCATCCTTAGGTGATGTCCATCAAACGCCAGAAAAAACCATTCATCATCAAACACCAGAAAAAGTTTCAATTCATAAAAGAAAGGAAGAGACAACTCCGCCGCCATATGTGACCAAGAGAAATATCAACAATGATGCTGAACCGATACCGCAATGTTCGTGGATGCCTGATGCGCCTCCTCGAGAGCCGAATAATGAGGAAGTTCTAAACGTGTCAAACATATTTCCCCTCGCATCGCCGCAGGATTTGCAGCCAATTCCTAAAGTAACTATTACTGCAAAACGCCCCCAGCGAAAACGAGGAAAAACGGCGATTTTAACGTCTACTCCCTACAAAATGGAACTGGAAAATTcaattaaacagaaaaacgaaaaagctAAAGGcgtgaaaagaaaaattaagagcctaatgaaaaatactacgaaaaaaacaactaaaaagattaaagaaatcaagcaaaagaaagaaaacgataaAGATTCATCAACTGACGAAGACGAAGCAATATGTTTTTACTGCGATGAATTTTACAGTACTTCCACTGAGGGATGGATTTCATGTTGTCTCTGCCATAAATGGGCACACAATTCGTGTGCAGGAATCGACAGCGATGACGATGAGACTGTATTCCAATGTgaattttgtaaacaataa
Protein Sequence: MVRKYTRTTTRQSWSAESMKEAVQAVITRTMGYKRAAQQFKVPQTTLERYVAKAKREQGTMFTVAHLGSVRNVFTEDQELEIVKYVKDMESRLFGFTMTELRKFVYQLAVANGVANRFSQDTQMAGPDWMEHFLRKHPTITLRKPEATSGARAMGFNKVAVNQFFGLLLSIIDKYQLSADKIYNCDETGLTVNPKGHSKILALKGKRQVGVLTSADRGETVTVEICCSASGSYFPPCLIFPRKRKRPEFELGLPPGCMVETSESGWVTSDIFFRWFKKFVQFSGGSKDNIVLLIFDGHATHTKNLDLINYAKENGVVLLCLPPHCSHKLQPLDVGFMKPLSTYYENEVRVWLRSNPGKVVTLWQISSLFGAAYINTATMKNAMNAFKKTGIWPPNQNIFEDSDYLPASTTDIPINNEADEAYTQTNQQDEQPSLGDVHQTPEKTIHHQTPEKVSIHKRKEETTPPPYVTKRNINNDAEPIPQCSWMPDAPPREPNNEEVLNVSNIFPLASPQDLQPIPKVTITAKRPQRKRGKTAILTSTPYKMELENSIKQKNEKAKGVKRKIKSLMKNTTKKTTKKIKEIKQKKENDKDSSTDEDEAICFYCDEFYSTSTEGWISCCLCHKWAHNSCAGIDSDDDETVFQCEFCKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01128259;
90% Identity: iTF_01128259; iTF_01128360; iTF_01128333; iTF_01128338; iTF_01128339; iTF_01128340; iTF_01128341; iTF_01128342; iTF_01128345; iTF_01128346; iTF_01128347; iTF_01128348; iTF_01128349; iTF_01128350; iTF_01128351; iTF_01128352; iTF_01128357; iTF_01128359; iTF_01128364; iTF_01128334; iTF_01128336; iTF_01128337; iTF_01128344;
80% Identity: -