Opom002959.1
Basic Information
- Insect
- Oxystoma pomonae
- Gene Symbol
- JRK
- Assembly
- GCA_963921995.1
- Location
- OY998163.1:74762097-74768935[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-09 2.6e-06 28.3 0.3 3 37 17 51 15 56 0.93 2 2 0.24 73 4.4 0.0 14 43 664 692 651 694 0.82
Sequence Information
- Coding Sequence
- ATGGTGCGAAAGTACACAAGAACAACAACTCGCCAAAGCTGGTCTGCAGAGTCGATGAAAGAAGCAGTACAAGCGGTTATTACAAGAACCATGGGTTATAAAAGAGCAGCGCAGCAGTTTAAAGTACCTCAAACGACATTGGAGCGTTATGTtgcaaaagcaaaaagagaaCAGGGGACAATGTTTACAGTCGCACATTTAGGAAGTGTCAGAAATGTGTTTACTGAAGCTCAAGAGTTAGAGATTGTCAAGTATGTAAAGGATATGGAATCAAGGTTATTTGGCTTCACCATGACagaattaagaaaatttgtttaccAATTGGCGGTCGCAAATGGTGTTGCAAACAGGTTTAGTCAAGATACTCAAATGGCCGGTCCTGACTGGATGGAGCATTTTCTTCGAAAACACCCGActataactttaagaaaaccAGAAGCTACATCAGGAGCTCGAGCCATGGGATTCAACAAAGTAGCTGTAAATCAGTTTTTCGGTTTGCTTCTAAGTATTATAGATAAGTATCAATTATCCGCCGACAAAATTTATAATTGTGATGAGACAGGACTCACTGTAAATCCAAAAGGACATTCCAAGATACTGGCCCTTAAAGGTAAACGCCAAGTGGGTGTTCTCACGTCTGCAGATCGAGGTGAAACAGTAACTGTGGAAATTTGTTGCTCAGCTTCTGGAAGTTATTTTCCTCCCTGTCTCATTTTTCCCAGGAAAAGGAAGCGTCCAGAATTTGAACTTGGTTTGCCACCGGGGTGTATGGTCGAAACAAGTGAATCTGGTTGGGTGACAAGTGCCATTTTTTTTcgatggtttaaaaaatatgtgcaATTTTCTGGAGGTTCAAAAGATAACATCGTACTATTAATTTTCGATGGGCATGCTACGCATACGAAAAATCTGGACCTTATCAATTATGCCAAAGAGAATGGAGTGGTTCTGCTTTGTTTACCTCCTCACTGCTCGCATAAACTTCAGCCACTTGACGTTGGATTTATGAAACCTCTCAGTACCTACTACGAGAATGAGGTAAGAGTTTGGTTACGAAGTAATCCTGGAAAAGTAGTAACACTTTGGCAAATATCGTCTCTTTTTGGCGCTGCCTATATCAACACAGCAACGATGAAAAATGCTATGAATGCtttcaaaaaaactggaatttggcccccgaatcaaaatatttttgaagatagtGACTATCTACCAGCGTCTACGACCGATATTCCCATAAACAATGAAGCCGATGAGGCCTATACCCAGACTAATCAACAAGATGAACAGCCATCCTTAGGTGATGTCCATCAAACGCCAGAAAAAACCATTCATCATCAAACACCAGAAAAAGTTTCAATTCATAAAAGAAAGGAAGAGACAACTCCGCCGCCATATGTGACCAAAAGAAATATCAACAATGATGCTGAACCGATACCGCAATGTTCGTGGATGCCTGATGCGCCTCCTCGAGAGCCGAATAATGAGGAAGTTCTAAACGTGTCAAACATATTTCCCCTCGCATCGCCGCAGGATTTGCAGCCAATTCCTAAAGTAACTATTACTGCAAAACGCCCCCAGCGAAAACGAGGAAAAACGGCGATTTTAACGTCTACTCCCTACAAAATGGAACTGGAAAATTcaattaaacagaaaaacgaaaaagctAAAGGcgtgaaaagaaaaattaagagcctaatgaaaaatactacgaaaaaaacaactaaaaagattaaagaaatcaagcaaaagaaagaaaacgataaAGATTCATCAACTGAAGAAGACGAAGCAATATGTTTTTACTGCGATGAATTTTACAGTACTTCCACTGAGGGATGGATTTCATATTGTCTCTGCCATAAATGGGCACACAATTCGTGTGCAGGAATCGACAGCGATGACGATGAGACTGTCCTACAAGTGAAAACAACCCGAAAACCGATTACGGAAGCAATGCTTCAAGAATGTTTGCAAATAAAGGTCAATGGTGAATCAGTACGAGCTATCGCCAGAGACTTTGAGGTCGACGAGTCTTCTTTAAGGGCCCGTTTAAAGCGTGATTATAAAGTAGAATCTCTGGGGCGGTTCAAAACAATTTTCAGTGACGAGCAAGAACAGGAACTGGCGGAACATTGCTGA
- Protein Sequence
- MVRKYTRTTTRQSWSAESMKEAVQAVITRTMGYKRAAQQFKVPQTTLERYVAKAKREQGTMFTVAHLGSVRNVFTEAQELEIVKYVKDMESRLFGFTMTELRKFVYQLAVANGVANRFSQDTQMAGPDWMEHFLRKHPTITLRKPEATSGARAMGFNKVAVNQFFGLLLSIIDKYQLSADKIYNCDETGLTVNPKGHSKILALKGKRQVGVLTSADRGETVTVEICCSASGSYFPPCLIFPRKRKRPEFELGLPPGCMVETSESGWVTSAIFFRWFKKYVQFSGGSKDNIVLLIFDGHATHTKNLDLINYAKENGVVLLCLPPHCSHKLQPLDVGFMKPLSTYYENEVRVWLRSNPGKVVTLWQISSLFGAAYINTATMKNAMNAFKKTGIWPPNQNIFEDSDYLPASTTDIPINNEADEAYTQTNQQDEQPSLGDVHQTPEKTIHHQTPEKVSIHKRKEETTPPPYVTKRNINNDAEPIPQCSWMPDAPPREPNNEEVLNVSNIFPLASPQDLQPIPKVTITAKRPQRKRGKTAILTSTPYKMELENSIKQKNEKAKGVKRKIKSLMKNTTKKTTKKIKEIKQKKENDKDSSTEEDEAICFYCDEFYSTSTEGWISYCLCHKWAHNSCAGIDSDDDETVLQVKTTRKPITEAMLQECLQIKVNGESVRAIARDFEVDESSLRARLKRDYKVESLGRFKTIFSDEQEQELAEHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01128353; iTF_01128357; iTF_01128360; iTF_01128333; iTF_01128338; iTF_01128339; iTF_01128340; iTF_01128341; iTF_01128342; iTF_01128345; iTF_01128346; iTF_01128347; iTF_01128348; iTF_01128349; iTF_01128318; iTF_01128350; iTF_01128351; iTF_01128352; iTF_01128359; iTF_01128364; iTF_01128334; iTF_01128336; iTF_01128337; iTF_01128344;
- 90% Identity
- iTF_01128353;
- 80% Identity
- -