Onig012772.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- -
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:9631740-9637863[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0057 1.6e+02 4.1 0.0 21 44 233 256 228 261 0.82 2 9 0.0017 48 5.8 0.0 21 44 261 284 257 289 0.90 3 9 0.026 7.2e+02 2.0 0.1 22 44 290 312 287 316 0.86 4 9 0.0033 93 4.8 0.0 18 46 314 342 312 347 0.89 5 9 0.0041 1.1e+02 4.6 0.0 22 44 359 381 352 386 0.87 6 9 0.0041 1.1e+02 4.6 0.0 21 44 386 409 383 417 0.83 7 9 0.021 5.8e+02 2.3 0.0 18 44 411 437 408 442 0.82 8 9 0.045 1.3e+03 1.2 0.0 23 44 528 549 517 553 0.83 9 9 0.0014 39 6.0 0.0 21 45 554 578 551 586 0.84
Sequence Information
- Coding Sequence
- ATGAATGCTGAACTAAAAGACGTGGTGAATTCTGCATTATCATCAAAGATATCTGTAAATGACGATGAGATGCAGTTACTCCTGGAAGCCGGATATAAACCAGAAGACATTGAAATAGTTATTCTCGAAACGAATTCGAAACAACCAGAAAAGTCGTATGTCAAAAACGAAATACCAATAAAGCAACCAATTATCCAAGAAAGTACGAACGAGGTGACGGAAGAAATGGATGTTGATGATCATGATTATTTGGATAAAGGAAATAATATTGATGCTGAATATCATATTGAAGAGAATAGTTCTGTCGGTGATAACCTTGAAATTGATGATAATTCTGAAGACATTGAACACGTAGAATCAGAAAAACAGTCTGATACGGGCAGAGATTGTAATAAAGCGTCGAACGATATGCTAGATTCAACACACGAGCATCCCAATGAACAGGAGTTAAAACTATATAAGTGTGAAGCTTGTGGagataaatttatgaaaaaagaaGAATGCGAAGAGCATATACTGAATGAACACGATCAAAAATTGTATATATGTGACATTTGTGGCAAAGTGTTTGAGTGTGAAAATTTATTGGGTGTTCATACAAAAGCACATGCATCAATTAAAGGATACAAATGTGAAACTTGCAATGATTGTTTTGGGTCTAAAGATAAATTGATGCTACACATGAGCCTGCATTCGGGAGAGCAGCCGTATAAGTGCAACATTTGTGGAAAGACGTTTGTACAAAACTATTCGCTGGTATATCACATGAGAGTGCATACCGGCGAAAGGCCTTTTTCCTGTGATAAGTGCGGGGCGAGTTTTCGCCAAAAGGGTAGCCTTAAAcaacaCATGTTCATTCATACTGGCGAACGACCCTATAAATGCAAGGTTTGTGATCGAGGTTTCACGCAAAGTCATTCGCTAACATTCCATATGAGACGGCACACTGGTGAAAAGCCATTTATATGTGATAAATGTGGTAATAGTTTTCGACAGAAGGAAGCTTTGAAGCATCATATGCGAATTCACATAGAAGGAAGATCCAGCAGGCTAAATAAGAAAAATACTATCATTGAAAAGCCGTTCACGTGTGAAAAGTGTGGTGCAGTCTTTAGCCGAAAATCTATACTGAAACAACACATGTTTATTCATACCGGCGAACGACCGTACACATGTGATGTTTGCGGCAGGGGTTTCACGCAAAGTCATTCTCTTACTTTTCATGCAAGACGACATACCGGCGAAAAACCGTTTacttgtgaaaagtgtggctcAACATTTCGACATGCAATCGGATTGAAGGAAAACCTTGATGAGCACAAGCAGGAACATGTAAGTCAAAAGAACGAAATGGATTGTATAAGCGCTCAATCACCGGAATTGGCAAAAGAAGCAGATCGAGAGATAACTTCTACATCTCAATCAGTCCAAATTGAATACTTGGAGCAAGAACCGACTAATAATCCGCTCGCAGAGGTCGAGTTGAAATTGGAAACATATATGTACTCTTGCACAAAGTGTGAGATTGGTTTTGATACGCAGGCCAAGTATACGGAACACATGCAGACACATAGTAATGTAAAGCCATATCAGTGTGATATATGCGGTAATGGCTTTACGCAAAACGGATCATTGAAGCAGCATATGCTTATTCATACGGGCGAACGTCCTTATACGTGCGACCTTTGTGGAAGAGGATTCACGCAGAGTAAATCTCTAACGTTTCACATGCGGCGACATACAGGTGAAAAACCGTTTGAGTGTGAAGAATGCGAAATGAAATTTCGAGTGAAAGACGCTTTGAAGGTAATTGAAAGCAACTAA
- Protein Sequence
- MNAELKDVVNSALSSKISVNDDEMQLLLEAGYKPEDIEIVILETNSKQPEKSYVKNEIPIKQPIIQESTNEVTEEMDVDDHDYLDKGNNIDAEYHIEENSSVGDNLEIDDNSEDIEHVESEKQSDTGRDCNKASNDMLDSTHEHPNEQELKLYKCEACGDKFMKKEECEEHILNEHDQKLYICDICGKVFECENLLGVHTKAHASIKGYKCETCNDCFGSKDKLMLHMSLHSGEQPYKCNICGKTFVQNYSLVYHMRVHTGERPFSCDKCGASFRQKGSLKQHMFIHTGERPYKCKVCDRGFTQSHSLTFHMRRHTGEKPFICDKCGNSFRQKEALKHHMRIHIEGRSSRLNKKNTIIEKPFTCEKCGAVFSRKSILKQHMFIHTGERPYTCDVCGRGFTQSHSLTFHARRHTGEKPFTCEKCGSTFRHAIGLKENLDEHKQEHVSQKNEMDCISAQSPELAKEADREITSTSQSVQIEYLEQEPTNNPLAEVELKLETYMYSCTKCEIGFDTQAKYTEHMQTHSNVKPYQCDICGNGFTQNGSLKQHMLIHTGERPYTCDLCGRGFTQSKSLTFHMRRHTGEKPFECEECEMKFRVKDALKVIESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127720;
- 90% Identity
- iTF_01127720;
- 80% Identity
- iTF_01127720;