Basic Information

Insect: Oxycera nigricornis
Gene Symbol: -
Assembly: GCA_963942545.1
Location: OZ012662.1:96648366-96656494[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.1e-05 0.014 17.4 0.8 1 23 161 183 161 183 0.97

2 15 0.00089 0.17 13.9 2.9 1 23 189 211 189 211 0.97

3 15 0.00066 0.13 14.3 0.1 1 23 296 318 296 318 0.98

4 15 0.01 2 10.6 1.2 1 23 324 346 324 347 0.96

5 15 1e-05 0.002 20.0 4.2 1 23 374 396 374 396 0.98

6 15 0.017 3.3 9.9 0.3 1 23 408 430 408 430 0.94

7 15 0.33 66 5.8 0.2 1 23 436 459 436 459 0.85

8 15 0.098 19 7.5 1.2 2 19 467 484 467 485 0.95

9 15 0.00011 0.022 16.7 5.0 1 23 494 516 494 516 0.96

10 15 0.009 1.8 10.8 0.6 2 23 522 543 521 543 0.97

11 15 2.6e-06 0.00051 21.9 0.3 1 23 551 573 551 573 0.98

12 15 0.0017 0.33 13.1 0.2 3 23 581 601 579 601 0.97

13 15 5.2e-05 0.01 17.8 0.5 1 23 607 629 607 630 0.95

14 15 0.0048 0.95 11.6 0.1 1 23 644 666 644 666 0.97

15 15 0.001 0.2 13.7 0.3 1 23 1073 1095 1073 1095 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.1e-05	0.014	17.4	0.8	1	23	161	183	161	183	0.97
2	15	0.00089	0.17	13.9	2.9	1	23	189	211	189	211	0.97
3	15	0.00066	0.13	14.3	0.1	1	23	296	318	296	318	0.98
4	15	0.01	2	10.6	1.2	1	23	324	346	324	347	0.96
5	15	1e-05	0.002	20.0	4.2	1	23	374	396	374	396	0.98
6	15	0.017	3.3	9.9	0.3	1	23	408	430	408	430	0.94
7	15	0.33	66	5.8	0.2	1	23	436	459	436	459	0.85
8	15	0.098	19	7.5	1.2	2	19	467	484	467	485	0.95
9	15	0.00011	0.022	16.7	5.0	1	23	494	516	494	516	0.96
10	15	0.009	1.8	10.8	0.6	2	23	522	543	521	543	0.97
11	15	2.6e-06	0.00051	21.9	0.3	1	23	551	573	551	573	0.98
12	15	0.0017	0.33	13.1	0.2	3	23	581	601	579	601	0.97
13	15	5.2e-05	0.01	17.8	0.5	1	23	607	629	607	630	0.95
14	15	0.0048	0.95	11.6	0.1	1	23	644	666	644	666	0.97
15	15	0.001	0.2	13.7	0.3	1	23	1073	1095	1073	1095	0.97

Sequence Information

Coding Sequence: atgaacgTTTCCGGCTACCGTATCGAATGGGTGGAAGAAATGCCCCATTCATCTGAAATTGTTAGCGAAGAAGTGATTGGCATCGATGACGAGAACGACGAGGAAGTCGACACGACCGAAGAATATCTTGTGGGCGAGGAGATCATCTCGTCGGTGGACATGAACTCGATACCGAATAGTCTTGATCAGGTGGCCGCCGAAAATCTGATTTATATGGCGCACGACGGCCAAATGCAAGCCATGGGCGATTTGATTGAGGAACAAGTGGAGGAGACCGACAACGCCAATTACAATGAAGTACAATATTTCGAGTGTCAAGTCACGGAGGAGGTGATAACTGACGATTGGGTGCAGTCGCAAGGAGAAGAACGCGTTGAAATCCCAGCGAACCAACTTGGCAGCGCAGCAGATAATCAGATTGTGACCGAAGTAGAGGTGCCGTTGCCAACCGATCAGGACGAGTACACAGCGTTGCGGCCATACCCATGTGATTTTTGCAGTCGTCGATTTCGGAAAAAGGTCAGTTTGATGAATCACATGATTGCCCATCAAAACGATCGTCCGCACGTGTGTAATTTGTGCGGGGCGCGGTACATTCGCCGCAGCGATTTGCACAATCATTTCAAGGTGCACGCTCACATACCCGAACAGAATTTCGATGATATCGATGACAGTTTTCTAAATGATCACGTCGAGCCGCGAAATGACAATAGAGGCCACGAATACTACGAGCACGAGCAAGTGACGCCAAAACCGAATGTAAAGATACGAAAGCGAAAAATCAAAGAAGAGGTGGAGCTGTATTCGACAGTAGAGCAAACTATTGAAGAGCCACAGCTACAGCAGCAAGTAGAACGTTATCCTGTGACTGATCCGCGAAAGCCATTCGTTTGTCAGCAGTGCGGAGTTGGGTTTGCACGTGAAAAGGCTTTGCTATCGCATTCAAGGATACATGGAGGCGATTCCCCGTACGAGTGTACATCGTGCAATGAAATGTTCTGGGACATAAACATGCTCAACGATCATCAACGCACGCACCACTTTGAAGCAAGCAACTCAGAATACGAGCCTGAAAATGACGAGGAAACTGACTCGGACAACGATTCGAAATATGGCGAGTTCTATTGTAATATTTGTGGAATGTCGTTCCATCGGAAAGATCTGTTAAAACGTCACTCAAAGACGCACGTGAAAAAGGAAGAGTATGAAGCGGATACGCGACACTGTTGCAATGTTTGCGGCGAAACATTTCAAGAAGCGTTGGATTTATTAGCGCACGCAGAAGTGCATGCCCGTTTTCAGCCGTTCAAATGTGCATTGTGCGGTGAAACGTTCCTCGAGGAAGCCACAATTAAAAAGCATTTGACGAATGTACATTCGGGGGAAATGAATTCGAATTCGTGCAAGCTGTGCGGGAAACAGTGTCGCGATGGTAGATCGTTGATGAAACACGCATGGGATCATTCTTTGAAAAAGAACCATTCGTGCTCGTTGTGTGGGAAAACGTTTCATAATAAAGCGAGACTCAAACGACATATGGTCTCGCATCGAAATAAATCCGTGCGATGTGATGTTTGCAATGAAGAATTTCCGGACGGACGAAGTTTAATGAATCATCGACATTCGCATAACAACACGTCGGGTCGACAGTTTCCTTGCAACGAGTGTGGCAAAACGTTCGGATCAAGGAGCTCACAACAAATCCATATTCGTATTCATACTGGCGAGCGGCCGTACGGATGTCGTTATTGTTATAAAGCGTTTGCTGACGGCGGAACGCTTCGAAAACATGAAAGGATTCACACAGGTGAAAAGCCGTATGCCTGCTCAGTCTGTCCGCGTGCATTTAACCAAAGAGTTGTTCTACGCGAACATATACGTTCACATCATTCGGCGCCAGATACGAAACGTGGAACTGCCTTAATGCCATATTATTGTACCGTTTGTTCTGAAATGTTTGTCGCGTCCACGGAATTGGTGCAACATTTGATACAGCACAGTGATTTGAATACAGCAATGCAAAGACAACCAGTTACTGGACCACGCAAATATAAGCGAAGACGCAACCTAAAGCCGCACGAACTAGAACGATTGCGAACCGAAAAATCACAAACTAGCGATGCCGAATATTCCGATTTGGATATGGGCAATGTTGACGATCTTCTCGAGCTCAGCAAAGCGAAACGCTCCCCACTCGATCTAATGTCCGGATCGTCGACATTCGGCGGACTATCAAGTCGCAGTCGTAAATATTCAGCTGGTTCTGATAAAGTTGCCAGTTGGCAGCAGAAGCTGATGGCATCGTCGAGCAACGACGCTTATACGGAGCTGAACAATCTTGAGAACGATATTAAGAATATTGAGCCGCTAGTCGTGAATAACTCCTCGAATCAATTGCATGTGCCGTCATCAGCTGCCACCCGACAAACCAAAGGCAATGCAAAACGACGTGCTGCCAAACACGAAGTGGAGAAGCCGTCGCGGCCCAAAATGATACACACGCAGAAGACGCGGGTGGCGACCGACGATGGGAAGCGTCGCACGCGAACTATGATCACTAGAACGGAGCCAACAGAAATAGACGAACAGGACTTTCACCAGTTCGATCGGCCGCTGAAAATGGAACAGCATCGCGACAATAGCGCTAGCGACTATGAACTGAGCAACCTCAGTCGTTTGGAAAGGAACTCTAGTCATCCAAATCTGAAACCGGAAGAGTTGGCACGCAACGACCTGTTCAATGCTCAACTTCTCCTAGAGGCTGCAACCATTCGCAAAGAGCTGGAGAAATACAATCCGGATGTGGTGAACGATCTCGAGGAGATACTACGCTCGCCGGTGAAATCTAAAACCTCCCCCTCTCCACAAACCATCTACGTTACGCACACCAAATTGGAAGTGACACCACCTGAAATTGTAGACACTTTGAATTCCGGTGATGAATTACGACGTTCGGCCCGGATTAAACGATCGGCCACAAACAAAAAGTATTTAGACTTTGAAACGTCGCCAACGTCTTCCGCAGGACCACGTAGCTCGTTAGCATCGTCGCCGCTCAAACCCAGGTATATTAAGGAGGAACAAGTCAAAGTGAAAAAGGAGAAAGTCGACGCGAATAATGGTGGCttgattaaaaatgaatttattataaCCGAACGTGATTCACCAGTCGATCAGCAAGACGGTCAACAGCAACGAGAACAACAACAGCAATACTTCCAATGTGAAATGTGCTTTGCCACGTTTCCGGATCGGGCGCAGCTTCTTGTGCATGTTCACATTCATATCTAA
Protein Sequence: MNVSGYRIEWVEEMPHSSEIVSEEVIGIDDENDEEVDTTEEYLVGEEIISSVDMNSIPNSLDQVAAENLIYMAHDGQMQAMGDLIEEQVEETDNANYNEVQYFECQVTEEVITDDWVQSQGEERVEIPANQLGSAADNQIVTEVEVPLPTDQDEYTALRPYPCDFCSRRFRKKVSLMNHMIAHQNDRPHVCNLCGARYIRRSDLHNHFKVHAHIPEQNFDDIDDSFLNDHVEPRNDNRGHEYYEHEQVTPKPNVKIRKRKIKEEVELYSTVEQTIEEPQLQQQVERYPVTDPRKPFVCQQCGVGFAREKALLSHSRIHGGDSPYECTSCNEMFWDINMLNDHQRTHHFEASNSEYEPENDEETDSDNDSKYGEFYCNICGMSFHRKDLLKRHSKTHVKKEEYEADTRHCCNVCGETFQEALDLLAHAEVHARFQPFKCALCGETFLEEATIKKHLTNVHSGEMNSNSCKLCGKQCRDGRSLMKHAWDHSLKKNHSCSLCGKTFHNKARLKRHMVSHRNKSVRCDVCNEEFPDGRSLMNHRHSHNNTSGRQFPCNECGKTFGSRSSQQIHIRIHTGERPYGCRYCYKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSAPDTKRGTALMPYYCTVCSEMFVASTELVQHLIQHSDLNTAMQRQPVTGPRKYKRRRNLKPHELERLRTEKSQTSDAEYSDLDMGNVDDLLELSKAKRSPLDLMSGSSTFGGLSSRSRKYSAGSDKVASWQQKLMASSSNDAYTELNNLENDIKNIEPLVVNNSSNQLHVPSSAATRQTKGNAKRRAAKHEVEKPSRPKMIHTQKTRVATDDGKRRTRTMITRTEPTEIDEQDFHQFDRPLKMEQHRDNSASDYELSNLSRLERNSSHPNLKPEELARNDLFNAQLLLEAATIRKELEKYNPDVVNDLEEILRSPVKSKTSPSPQTIYVTHTKLEVTPPEIVDTLNSGDELRRSARIKRSATNKKYLDFETSPTSSAGPRSSLASSPLKPRYIKEEQVKVKKEKVDANNGGLIKNEFIITERDSPVDQQDGQQQREQQQQYFQCEMCFATFPDRAQLLVHVHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01376074;
90% Identity: -
80% Identity: -