Basic Information

Insect: Oxycera nigricornis
Gene Symbol: -
Assembly: GCA_963942545.1
Location: OZ012661.1:334593-338823[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8e-05 0.0074 18.2 2.9 1 23 408 430 408 430 0.98

2 18 9.6e-06 0.0019 20.1 0.4 1 23 436 458 436 458 0.97

3 18 5.1e-05 0.01 17.8 1.7 1 23 464 486 464 486 0.98

4 18 5.5e-05 0.011 17.7 3.6 1 23 492 514 492 514 0.97

5 18 0.00024 0.046 15.7 4.9 1 23 520 542 520 542 0.98

6 18 8.5e-05 0.017 17.1 5.7 1 23 548 570 548 570 0.97

7 18 4e-07 7.8e-05 24.5 4.3 1 23 576 598 576 598 0.98

8 18 1.5e-07 2.9e-05 25.8 2.4 1 23 604 626 604 626 0.97

9 18 0.0002 0.039 16.0 5.7 1 23 632 654 632 654 0.97

10 18 7.9e-05 0.016 17.2 6.4 1 23 660 682 660 682 0.98

11 18 2.1e-05 0.0042 19.0 4.7 1 23 688 710 688 710 0.98

12 18 1.6e-05 0.0031 19.4 7.1 1 23 716 738 716 738 0.98

13 18 1.1e-06 0.00022 23.1 7.2 1 23 744 766 744 766 0.98

14 18 0.0018 0.35 13.0 10.1 1 23 772 794 772 794 0.97

15 18 0.00028 0.054 15.5 9.5 1 23 800 823 800 823 0.95

16 18 0.00014 0.027 16.5 0.4 1 23 829 851 829 851 0.97

17 18 0.0014 0.28 13.3 3.3 1 23 861 883 861 883 0.98

18 18 4.3e-06 0.00085 21.2 1.6 1 23 889 912 889 912 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8e-05	0.0074	18.2	2.9	1	23	408	430	408	430	0.98
2	18	9.6e-06	0.0019	20.1	0.4	1	23	436	458	436	458	0.97
3	18	5.1e-05	0.01	17.8	1.7	1	23	464	486	464	486	0.98
4	18	5.5e-05	0.011	17.7	3.6	1	23	492	514	492	514	0.97
5	18	0.00024	0.046	15.7	4.9	1	23	520	542	520	542	0.98
6	18	8.5e-05	0.017	17.1	5.7	1	23	548	570	548	570	0.97
7	18	4e-07	7.8e-05	24.5	4.3	1	23	576	598	576	598	0.98
8	18	1.5e-07	2.9e-05	25.8	2.4	1	23	604	626	604	626	0.97
9	18	0.0002	0.039	16.0	5.7	1	23	632	654	632	654	0.97
10	18	7.9e-05	0.016	17.2	6.4	1	23	660	682	660	682	0.98
11	18	2.1e-05	0.0042	19.0	4.7	1	23	688	710	688	710	0.98
12	18	1.6e-05	0.0031	19.4	7.1	1	23	716	738	716	738	0.98
13	18	1.1e-06	0.00022	23.1	7.2	1	23	744	766	744	766	0.98
14	18	0.0018	0.35	13.0	10.1	1	23	772	794	772	794	0.97
15	18	0.00028	0.054	15.5	9.5	1	23	800	823	800	823	0.95
16	18	0.00014	0.027	16.5	0.4	1	23	829	851	829	851	0.97
17	18	0.0014	0.28	13.3	3.3	1	23	861	883	861	883	0.98
18	18	4.3e-06	0.00085	21.2	1.6	1	23	889	912	889	912	0.97

Sequence Information

Coding Sequence: ATGAGCTCGGTGCCCCACGACAACAACCCCGGGGCGGACGCCCAGATGCGGCAATCATCGCAGTACCAGCAGCAAATTGACGAGCAAAATCGCCGCCAGCAGCAACATCAGCAAAATCAGCATCCGTCGCAAGGAGGCGGTCATCATCCACAAGAGCAGCGGATTGCGGGTGTAATTCATCAACCCGTAAGTGAAGCTGAAATCAAACATCCCTTGCCGTTGGCCAATGCGCCCCAACTCGGTAAGTACTGGGTCGTCACAACAAATCTTTTTCAAGGTCCAGGGCAAAACGCGACAGCGTACAATGTCACGACCGGACAACCGACGTCCTCGTCGGGTGGCGTTGTTATACCGGCCGGCCAAGCGTCGCAATCGCATCCCACCATGAAGGCGGATGGAATCAAGCAAGAAGAAGCAAACATACATCAGCAGCGCCAACATCTGCAGCAGCAAATAGTGACTGTGAGCAGCGCCCCAAATACAATCCAAATACCCAATTCGATGATCGTCACGCAGCAGGGCTCGCAGCAGATAACAAACGCAACTATGATTCACAGCAACCAACAACCTCCCGAGCATATCCAGGTAGCTGTCAATCCAGAAAACAGTATTATGATAATGGACACCTCTTCCAATAAAAACGAGAAGATGATGTCGAACCAAAGCATGAATACGAGCGAGCCGATGCAGGGCATCGAACGCGTGAAAGAAGAGAAGCCGTTCGTGAACTGTAAGATGCTGCCCcatcagcagcagcagcagatgCATGGCCAGCAGATTCCCACGGACCAAAAAATGCACATACCTCATCTGCTAGATGTGAGAAACGCGGACGGGTCGTTAATAAAGATCCAGTCGCAACAAGACCAGGAAATGGGCAAACCAATGGGCGTTGAAATGTATAAAGTCAACATTGAAGATTTAAGTCAGTTCCTCTCATATCACGAAGTGTTCGGAAAATTGCACGGTGGCGACGTAATCACGCATCCTGTTTCACATACGACTACGCACGTCATAAACACAGTAAGCAATGCACAATCAGCGGCCAAAACACCGTCTGCTTCGAATGTGGTCACGTCTGGGGCGAACATAACGTCGACAGCAGAACTATTGATGCCAAAAATGGAAGGGGTGACGACGCAAATGGCCGGGGTAAACCAAGTTCCCGGCGCTACGGGGACTCTGACCAACGCTGACGGGACAACTATAACACCCGCCACGCACACTTGTGACATATGTGGCAAAATGTTCCAGTTCCGGTACCAATTGATTGTGCATCGCCGCTATCACAGCGAACGTAAACCGTTTATGTGTCAAGTGTGTGGCCAAGGATTCACAACGTCTCAGGATCTCACACGACATGGGAAGATTCACATCGGGGGGCCGATGTTCACTTGTAACGTGTGCTTTCACGTTTTTGCCAATGACGCGAGCTTGGAACGCCACATGAAGCGGCACTCGGCGGACAAACCGTTTGCGTGCACAATGTGTCAGAAAACTTTTGCTCGGAAGGAACATTTAGACAACCATTTTCGTAGCCACACCGGCGAGACGCCATTCCGCTGTCAGTTCTGCGCGAAGACCTTCACACGAAAAGAGCATATGGTCAATCATGTTCGGAAGCATACTGGCGAAACGCCACACCGATGCGACATTTGCAAGAAGTCGTTCACGAGGAAGGAGCATTACGTTAATCATTACATGTGGCACACCGGTGACACGCCGCACCAGTGCGAAGTATGCGGAAAGAAATATACACGAAAAGAGCATTTGGCCAACCATATGCGATCGCACACTAACGACACGCCATTCCGATGTGAAATTTGCGGGAAGAGTTTCAGCCGAAAAGAGCATTTCACAAATCACATTCTATGGCATACAGGTGAAACACCCCATCGGTGCGACTTTTGTGCGAAAACATTTACTAGAAAAGAGCATTTGCTTAATCATGTGCGGCAACACACCGGCGAATCACCTCACCGTTGCACGTACTGTCTCAAGACATTCACGCGAAAGGAGCATCTTGTAAATCATGTACGGCAGCATACTGGTGAAACGCCCTTCAAGTGTACTTTCTGCACGAAGGCGTTTACGCGCAAGGATCACATGGTCAATCACATACGCCAACATACAGGCGAATCGCCACACAAATGCACATATTGCACGAAAACATTCACGAGGAAGGAGCATCTCGTCAACCACGTGAGGCAGCATACGGGCGAATCGCCTCACCGGTGCTCGTACTGCAACAAAACCTTCACGCGGAAGGAACACTTGACCAATCATATCCGCTTGCACACAGGCGACTCTCCGCATAAATGCGAATGTTGCCAGAAGACTTTCACGCGAAAAGAACACTTGAACAATCACATGAAGCAACATTCAAGCGATAATGCGCACTGCTGTAATGTCTGCAACAAACCGTTTACGCGTAAAGAACATTTGATAAATCATATGTCGCGATGTCATACTGGCGATCGGCCGTTTGCTTGCGAAACTTGCGGGAAATCATTCCCATTGAAAGGCAACCTGATCTTCCATCAGAGGAGTCACACGAAGGGCCAGGATGTGGAGCGACCTTTTCGTTGCGAAAAGTGTCCCAAGGACTTTATTTGTAAAGGGCATTTGGTGTCGCATATGCGAGCTCATTCCGGAGAAAAGCCACACGTTTGTTCTTTGTGCAGCAAGGCGTTTGTGGAAAAAGGAAATCTCAAGCGCCACATGAAAATGAATCATCCGAATGTGATTATTCCGCCATTGGGCTTGGTAGCTAACATCAAAACGGAAGTAAATCCGCCAACAACGGTCACGACAGCGGTCGTTTCTCAATACAGCACTATCAAAACCGAGGCGAATCCCACCACAATGGCCACAGCTCCGCAATATATGAACGAGCGAATCCAGTTGCTCACGAAAGCAAATCTGCTTCCATTAAATCCGCTAATTCCACATCAAGCGCCTACTATGCACACGATtcaacaaatcaccgccacttCGGCTAATTCTGCAATTAGCAATACTAGTACGCTCTCAGGAGCGACGACGGGACTAGTCCCCATAGTGACATCAACAATTACTTCACACGCCAATCAGCAGCAGCGGCAGTTGGAAGATGGAAATCTGCAAAAAGATACCAATTACCACCTCGGCATGTCGTCCCAAATGCAACAGCAGGCGCCATCTCAACAACAGCAAAACAATCCGGGCGGTGGTGATCATCCAACGCAATCCGTGCCCATCGCCATCATTCAGGCTGGCGATCCCGCCACCATCACGCGCGCATCTATTCAGCTGCAACATTTACCGCCCGGGGTCGATCACCATTCGGTGGTCTATTAG
Protein Sequence: MSSVPHDNNPGADAQMRQSSQYQQQIDEQNRRQQQHQQNQHPSQGGGHHPQEQRIAGVIHQPVSEAEIKHPLPLANAPQLGKYWVVTTNLFQGPGQNATAYNVTTGQPTSSSGGVVIPAGQASQSHPTMKADGIKQEEANIHQQRQHLQQQIVTVSSAPNTIQIPNSMIVTQQGSQQITNATMIHSNQQPPEHIQVAVNPENSIMIMDTSSNKNEKMMSNQSMNTSEPMQGIERVKEEKPFVNCKMLPHQQQQQMHGQQIPTDQKMHIPHLLDVRNADGSLIKIQSQQDQEMGKPMGVEMYKVNIEDLSQFLSYHEVFGKLHGGDVITHPVSHTTTHVINTVSNAQSAAKTPSASNVVTSGANITSTAELLMPKMEGVTTQMAGVNQVPGATGTLTNADGTTITPATHTCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCNVCFHVFANDASLERHMKRHSADKPFACTMCQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGDTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLVNHVRQHTGESPHRCSYCNKTFTRKEHLTNHIRLHTGDSPHKCECCQKTFTRKEHLNNHMKQHSSDNAHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLIFHQRSHTKGQDVERPFRCEKCPKDFICKGHLVSHMRAHSGEKPHVCSLCSKAFVEKGNLKRHMKMNHPNVIIPPLGLVANIKTEVNPPTTVTTAVVSQYSTIKTEANPTTMATAPQYMNERIQLLTKANLLPLNPLIPHQAPTMHTIQQITATSANSAISNTSTLSGATTGLVPIVTSTITSHANQQQRQLEDGNLQKDTNYHLGMSSQMQQQAPSQQQQNNPGGGDHPTQSVPIAIIQAGDPATITRASIQLQHLPPGVDHHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01376054;
90% Identity: -
80% Identity: -