Onig012233.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963942545.1
- Location
- OZ012660.1:3821254-3833044[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 1.3e+04 -3.3 0.8 42 93 65 117 52 123 0.63 2 3 6.7e-112 3.7e-107 359.7 35.0 1 299 179 463 179 464 0.95 3 3 0.094 5.2e+03 -2.0 4.1 220 244 492 516 468 537 0.46
Sequence Information
- Coding Sequence
- ATGGAAAGTATCCACGATAGTGTATCGAATATTagtgaaaatgatttgaatttgTCGAAAAAAGTTACCAAATCAGAGCAAAATAATAACTTTATTGGTGCCGAAATTGAATCAAAGGAAAATAATGGTTGGCGAAACATCGACAATAACGATAATGGTGAAGAGTTTGATTTTAATGATGACGATTTCAATTCAGAAAGTGACGATAATGATAATGAAACAATACATGGTTGTTCTGATAGTGAAATAAACGGTGAACATGCTTGTACACAAAATCATACCAAAGAGGATACGCAAATTGTTCTAAACGACACTGAAAATTCGGTCGTTATTGCGAAGCATAGTACAAGCGATGAGGCTGATCAAGCGTCCTTCGATGAAAATGGGGTTCATCTGCACAGGATCGATAGCACGGCTACAAACTCAAAATCAGAAGAATGCCATGTTGGCATTTCAGAGGACGAGGATAGCGTCTTCAATAGCGATGAAGAGACGGATTTGCTTGTAACATTTTTGGATAAAGCCAATGAAATTGCCGAGGCAAGATTAGCAGCTCGTCGCCAAGCGCGTGCCGAAGCACGCGAAATACGAATGAAAGAGCTGGAGCGACAACAGAAGGAACAGGAACAAAATGCAGACAGGGTGTTTGATATGCAAGCGGCAGCAGGACACGATCCTCTGTCTCGATCGCGACACACCTTGTCTGCAGGCTCAGCGCGCGGTAGCTCCTCGCTATCGTCGCGACGCAGCAGTGAAGATTCGCTGGAAGAGGAGGGCCGAAGCTTGCGGGATATTCGGCATGAACTGAAGGAAGTCGAGGATCGATTTCGTAAGGCAATGATCGCCAACGCTCAGCTGGACAACGAACGAGCGTCACAATCGTATCAAATACAATTGCTGAAGGACAAACTGGAAGAGATGGAGGAGAACTTTGCGCAATTGCAACGCGAATATAAGGAAAAGTGCCGCGATCATAatgctttaaaacgaaatttaGATAAAGTCGAGGAAGAACTGAAACTAGTACGAGGACAATTGGAGGAACGCGATACTCTTATAGCCGAACAAGGTTTAGTTATAGTTATGATAGAAAATGAAGATGGCTCAGATGCCAAACGCGCTCTAGTCACTGTAGATAACGCACAACTATTAGGATCCGTTCAAGGTTCATTAGATGTTCGGCTTAAAAAATTCACGGAAGAGAAACTGGAGCTACAACGAGAAGTTAGTAATCTACAACAACAGATGTCCGAATTAAAATCACAACGAAAGGGTGGCTCGATGAATGGCCCGGTCGGCAATGATGATGAATTTGATGCACAAAGAGAAGCTAACAAGCTGATATCCGAATATAAGTATAAACTGCAAAAAGCTGAACAAGAAATTGCTAGTCTTCAGGCGAGCTTAGCGCGATCCGAAACGCAAGTCATACGATACAAGAGTACAGCAGAAGCAGCGGAAAAAGCGGAAGCCGAACTGAAAATCGAACGTAGGAAATTACAACGCGAGAATCGTGAAGCCATGGAACGTTTAGAGGAGCTCGAAACATCAAATAATCATTTACTAAAACGTTTAGACAAACTGAAGAATGCTAAGAGTGCACTGCTGAAGGACCTCTGA
- Protein Sequence
- MESIHDSVSNISENDLNLSKKVTKSEQNNNFIGAEIESKENNGWRNIDNNDNGEEFDFNDDDFNSESDDNDNETIHGCSDSEINGEHACTQNHTKEDTQIVLNDTENSVVIAKHSTSDEADQASFDENGVHLHRIDSTATNSKSEECHVGISEDEDSVFNSDEETDLLVTFLDKANEIAEARLAARRQARAEAREIRMKELERQQKEQEQNADRVFDMQAAAGHDPLSRSRHTLSAGSARGSSSLSSRRSSEDSLEEEGRSLRDIRHELKEVEDRFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEENFAQLQREYKEKCRDHNALKRNLDKVEEELKLVRGQLEERDTLIAEQGLVIVMIENEDGSDAKRALVTVDNAQLLGSVQGSLDVRLKKFTEEKLELQREVSNLQQQMSELKSQRKGGSMNGPVGNDDEFDAQREANKLISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -