Onig031103.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- lola
- Assembly
- GCA_963942545.1
- Location
- OZ012662.1:81574-83523[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-12 2.9e-09 38.1 0.0 4 43 360 399 357 401 0.91 2 2 2.5 1.2e+03 0.9 0.5 4 20 493 508 492 511 0.91
Sequence Information
- Coding Sequence
- ATGGGGAGTAGCGACGCACAAACGTACTGTCTACGATGGAACAATCACAAAGCTAATTTAGTGGAAATCCTAGATGCTCTAATAAAAATGGAAAGCTATGTAGACTGTACTTTGGTCGTGGAggatcaaattcaatttaaggCTCATCGGGTAGTACTGGCCGCTAATTCACcatattttcaaagcattttgcAAGATGTGCCAATGGACCATTGTAGTATTCTCATTCCGGGCGTTCAAGCTTTTGAAATGCGTGCACTGTTGGAATACATGTATACCGGTGAAGTGAATGTTACACAAAgtcaaattccaaaaattatgaaaatagcgGAGCAACTGGAAGTTAAGGGTTTATTCGATATGGCAGACTTGAAGGAGAAGTTCAACAAAATTGAAGAAATGAGTCCACAGCCAATGCAAGAGCCAACAACCCCCACAAAAGAATCAATTGATCAGCAGCAATTGTCTCCTGCTATTACAACCACATCAACGAGCGTGATATCAGCTCAAAATTGTGGGTCTTCACCACTGTACAGCTACAAACCACCTTATTGTAACATGTATTCCAAAAGCCCTGGCCCGTCTACTTCGGATCGACAATATTCAACGCCGTGGCCAATAACACCGCATCTACCGTCGTCAGTGCCTAGCGTAGCTGCGGCAGCAATGTTGAATTCTGTTTACGAAGCGGGATCAGATATGAACCCGTtaaaaaggaagaaaatttcttcaatgaCCAACATGTTGATGACCCGCGACACACCAATATTGCGTAACGTTTTAGCACAACAACATGCTGCAGATTCGTCGCAACCGATGCCATTGGTTTGTCCACCGATCAAACAGGAGTGTCGCCCGGAACAGCTACAAACAGATAGCTGTAATGGGGCTGACTTTAACTCAGAAAAAAAGGCGAACAAATATCAGGAGGCACATTCGCCCTATACCGACAAGTCATTTGAAGATGATTGCCTAGATCTTCCCTCTAACTATGGCAGTGAATCGAATTTAGCGTCATATGTTCCGCAGCAACAGCAAAAACCCGAATGGAAGCGTTACAAACAATATACGAGAAGCGATATTCTTTCGGCCATTGAATGTGTTCGAAATGGAATGAGCGCTTTGCAAGCATCTCGAAAGTATGGAGTTCCGTCTCGTACTCTTTATGATAAAGTGAAAAAGCTGGGCATCACAACAGCTCGTCCTACAAATCGAACTATCAAGCGAAGTCCAAGCAATAGTGGTGGTCAGAGTGGGTTTCGATTTAGTCTAGGGGCCCGAGCGCATACCTACGGGCCTAACGAGCAAATCCTTCAGCATATCCACGAGTCTAGTGAACGGGAAAGCGATCGCGAGCGCCAACTGTCAGCGACAATCCCACATCCAGCAGCTGCCCTCCTTGATCCCGCATTTTTGCAACAAGCATTTGAATCGAGAGGTGGTGAGATAGCTGGAAGAGAGGCGTTGCACGCAATGGCACTTGCAGCAGCAGCTCACGCGGCAGCTAATGGCATTTCAACTAGCCCAGGAGCGAATGGTACGGCTCGATCGCCCAGTCCCATGAAATATATTCCAAGCCAGCTAAGTCCAATAGAAACGCGAGAACGAGAGCTAAATGAGGAAGTGGACGATGATCAGGTTGAAGATTTGTCTGTCGGGGGTCGAAAGGACAACCAATCGCCTCCTTCATCAACTCCTATTATTTCACATACGTACCTTCAACAGCAAGAGCAACGAAATCAACTCTGGAAACATCACCAAACGCAAGCAGGTGTAATTGTTCCGCCCATGACGAAATTGCCATCAAACGGCGGTGACGACTACTCGCAAGAAATGAAACGAGACCCTCCATTGGAAGAAGTAACAGGAGATTATAATGACTCGTAG
- Protein Sequence
- MGSSDAQTYCLRWNNHKANLVEILDALIKMESYVDCTLVVEDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILIPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMADLKEKFNKIEEMSPQPMQEPTTPTKESIDQQQLSPAITTTSTSVISAQNCGSSPLYSYKPPYCNMYSKSPGPSTSDRQYSTPWPITPHLPSSVPSVAAAAMLNSVYEAGSDMNPLKRKKISSMTNMLMTRDTPILRNVLAQQHAADSSQPMPLVCPPIKQECRPEQLQTDSCNGADFNSEKKANKYQEAHSPYTDKSFEDDCLDLPSNYGSESNLASYVPQQQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTARPTNRTIKRSPSNSGGQSGFRFSLGARAHTYGPNEQILQHIHESSERESDRERQLSATIPHPAAALLDPAFLQQAFESRGGEIAGREALHAMALAAAAHAAANGISTSPGANGTARSPSPMKYIPSQLSPIETRERELNEEVDDDQVEDLSVGGRKDNQSPPSSTPIISHTYLQQQEQRNQLWKHHQTQAGVIVPPMTKLPSNGGDDYSQEMKRDPPLEEVTGDYNDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127589; iTF_01088626; iTF_01375659; iTF_01375947; iTF_01087999;
- 90% Identity
- iTF_01127589;
- 80% Identity
- iTF_01127589;