Onig040687.1
Basic Information
- Insect
- Oxycera nigricornis
- Gene Symbol
- bab1
- Assembly
- GCA_963942545.1
- Location
- OZ012663.1:1102042-1103563[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-17 4.2e-14 53.6 0.0 1 43 28 71 28 73 0.95 2 3 0.78 3.7e+02 2.5 0.5 1 15 164 178 164 192 0.80 3 3 10 4.7e+03 -1.0 0.0 20 29 195 204 195 205 0.88
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACAAATCAAAACTTAATGCATCACCTGCGATTTCGAGAGCGAGGACCATTAAAATCGTGGCGCCCTGAAACGATGGCCGAAGCAATTTTTAGTGTTCTAAAAGAAGGTCTTTCATTGTCCCAAGCCGCACGAAAATATGACATTCCATATCCTACATTTGTATTGTATGCAAATCGAGTACACAACATGCTGGGTCCTTCGATTGATGGTGGCACCGACTTGCGGCCGAAAGGAAGAGGTAGACCGCAGCGAATATTATTGGGAATTTGGCCGGATGATCATATAAAAGGCGTTATAAAGACTGTGGTATTTCGCGATGCCAAAGATATAAAAGATGAAGGAATGCACTTGTCGTATGGTAGGCAATCGCCAGTGTTCCCATTTCAAGAAGGACAAATAAATTACTCCGGGGCAACATGCGCAAATGGACTTCCGCAACAAACTACAGGCGCAAGCTCTGATCCGATGACTCCGGAGGCCACAGCAGCCGCTGTTGCTGCAGTAGCGCATGGCATCCGACAACAAATGCAAATGGTTGCAGCAGCCCAGCATCATCCTGACTCGCAGGCAGCAACTATTTTCAACATGCCTCCACATATGCATCCAAATAATGCTGGAGTGGCTATACCGAAACAAAATTCACCTGCGTCCAATTCACAGAGACATACATCGCCTTCGATATCTGGTCTTTCGAATTCGTCAAGCATAGGTATATCAAGCATGTCCGGGCTGCATAGTATTCCTGGCTTGGGCTCAAATCCCAGTGTTCAAACCAGTGTTGTAACGAACCCTTCCTATACACCGAACGTGAgcagtcaacaacattgttcgTTGAACACTGGAACGCTACTTGGCTCCACTAATATTTCTAGGAACAACTCTCCAAATGAAGCTGCTCATGATTTACGAATCAACAGTCCCGATGAAAGTCCTTTGAACTCGCCGTTAGGGATTGCACTAGAGCCTGCAGTAAACCTTGCAGTAGGGGTGAGTGGTATGACCTACAAACCCTCTCGAGGATACGCTTCCCCTCGGCCTGAGCACTTGTTCCAAGAAGATATCTCTGAGTTAGTTGGGAGGACATCGCGTGCttcaaatataaacaattttaagGAACCTTCCAGTAACATTAAGGTGGAGCCAGTTGCCGAGTGCAGATCAGAGTAA
- Protein Sequence
- MWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDDHIKGVIKTVVFRDAKDIKDEGMHLSYGRQSPVFPFQEGQINYSGATCANGLPQQTTGASSDPMTPEATAAAVAAVAHGIRQQMQMVAAAQHHPDSQAATIFNMPPHMHPNNAGVAIPKQNSPASNSQRHTSPSISGLSNSSSIGISSMSGLHSIPGLGSNPSVQTSVVTNPSYTPNVSSQQHCSLNTGTLLGSTNISRNNSPNEAAHDLRINSPDESPLNSPLGIALEPAVNLAVGVSGMTYKPSRGYASPRPEHLFQEDISELVGRTSRASNINNFKEPSSNIKVEPVAECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324239;
- 90% Identity
- -
- 80% Identity
- -