Opun028609.1
Basic Information
- Insect
- Othius punctulatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951805005.1
- Location
- OX638141.1:73682014-73683811[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.26 8.7e+03 -2.5 0.2 65 71 70 76 39 116 0.57 2 2 2.6e-49 8.5e-45 155.2 16.8 1 126 214 326 214 326 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAAAACGGCGATAGAACACATACCGTGATAACAATGAAGGATATGAAACGCCCAAACAGTATTGGAGAGGACAGCGACGACAGTTGCCTCTCGATCACTGACATACTAAACGAGCTTGAGGATCCGAACGCCTCAGATGATACGCAAATAAAACAACCGGGGGATGTGCGTGGTAGTGATGATACGTTGAGCGAGATGGGGCAGAAACAATCCAAGGAGACCGCAAAGTCTCTGGAATCAATCGAAAATGATGATACCGCAAAACCACCTGATAGTGCCAACAAATTTCTAGTATTGGCGGACTGCCAGGAAAAGCAGGAAAAGAAAAGCATTAATGAGTCACTGGAGAACGCCCCGGTCCGACCAGAATCAAATGCGGCTCCAAAAATTAATAGCGGTGCACCTGAAGCACCAATTCTGCCACCAGTGTGCAATTTCGAATTAGCAAATGATGTAACTTATTCCTCCCACGTAGCATCTGTTAGTTCCGAAAATAGTGACTCACAAACTAATGCAGTGCTTAATACATTAGTTGTTGAAGGTGTAACTTTAGATGAAAGCAGTGATGGCATACAGGAAATTAAGTCTACGCGTGATGCTATTAACCAATTTCTCGATAGCTCCACTGTAGAAGCGGAGGCCCGCCTCTTGGCGAAGAGGGCCGCCCGTGCGGAGGCACGCGAGATCCGGATGCGCGATCTGGAGCGTCAACAGCGCGAACAGGAAGAGAACGCTGACAGGCAGTTCGACATGCTAGCAGAGCCGATCATACGTAGGCCGGCGAGCACCTCCAGGTACCTCTCCAGTAGGAGGTCCTCGGAGGACTCGCTGGAGGACACCGGCAGTCTGCGAGACTTAAGGCATGAACTCAAGGAGGTCGAGGAGAAGTTCCGGAAAGCCATGATTGCCAATGCCCAGTTGGACAACGACAAGGCCGCGCAGACTTACCAATTGGAGCTCCTTAAAGACaggtaa
- Protein Sequence
- MGENGDRTHTVITMKDMKRPNSIGEDSDDSCLSITDILNELEDPNASDDTQIKQPGDVRGSDDTLSEMGQKQSKETAKSLESIENDDTAKPPDSANKFLVLADCQEKQEKKSINESLENAPVRPESNAAPKINSGAPEAPILPPVCNFELANDVTYSSHVASVSSENSDSQTNAVLNTLVVEGVTLDESSDGIQEIKSTRDAINQFLDSSTVEAEARLLAKRAARAEAREIRMRDLERQQREQEENADRQFDMLAEPIIRRPASTSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -