Onub024576.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- loco_1
- Assembly
- GCA_963855985.1
- Location
- OY979754.1:12328324-12340342[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.088 3.1e+03 -0.7 0.0 20 34 19 33 17 36 0.86 2 10 0.024 8.6e+02 1.1 0.0 19 34 75 90 72 93 0.87 3 10 0.0015 54 5.0 0.0 15 34 156 175 152 178 0.88 4 10 0.024 8.6e+02 1.1 0.0 19 34 278 293 275 296 0.87 5 10 0.0017 58 4.9 0.0 16 34 436 454 428 457 0.90 6 10 0.0058 2.1e+02 3.1 0.0 18 34 563 579 559 582 0.89 7 10 0.015 5.4e+02 1.8 0.0 19 34 670 685 668 688 0.88 8 10 0.0017 62 4.8 0.0 16 34 803 821 799 824 0.89 9 10 0.0015 54 5.0 0.0 15 34 905 924 901 927 0.88 10 10 0.0094 3.3e+02 2.4 0.0 18 34 967 983 962 986 0.85
Sequence Information
- Coding Sequence
- ATGTCTTTAGCAATTTCCACATCTAACCTCCCATCTCCATTGCTCCAGGTAGTAAAATCGAGCCAATCGGCCGGCTGTTCGCTCTGCCGCGTGGTGCTACCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGATGCCGGACAGTCTCGCCAGTGGGCCGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctacgACGTGCTGCTGAAGGACGCCGGACAGGTCGCTCTGCAGCGCAGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCTGGACAGGTACGTGGCAGGCTTCAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCTGGACAGCGCAGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCTGGACAGGTCGCTCTGCAGTGCAGGAACCTCGCCGCCGCCTATGACGTGCTGCTGAAGGACGCTGGACAGGTCGCTCTGCAGCGCAGGAACCTCGCCGCGGCTGCGTATGACGTGCTGCTGAAGGATGCGGGACAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCTGGACAGCTCTCTCTTATCTCTCCCTGCATCATCCCTGAAATCTGCGCCGCGTATGACGTGCAGCTGAAGGACGATGCCCAGATACACATCATACAGTTAAGTAGCTTAGCTAAAGTAGCTCAAGAACATTGGTCAGGCACGGATGGAGCTGAAGAGGACATCGATGGTAGATATCAGCAGCATCCAACCTCATCTCTTGCCATGGAGTCTCCCTGCAGCGCAGCAACCCTGCCTGCGCCACTTATGACATGCTGCTCAAGGAAGAGACACTTAGAAGAGACTAGGGCATTAGAGGTCCAGGTACGTGGCAGGCTTCAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTACCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGATGCCGGACAGGTATGTAGACTGGAGTGGCTTTCAGGGAGACGAAGGATACTGATCAAGCAAGCTGTGTCTCCTCTTTCCCTGCAGTGCAGGaacctcgccgccgccgcctacgACGTGCTGCTGAAGGATGCCGGACAGGTCTCTCTGCAGTGCGGCAACCTTGCCTGCGCCACTTACGACATGCTGCTCAAGGAAGAGACACTCAGGCTTCAGTCTCGCCAGTCGGCCGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGATGCTGGACAGCGCAGGAAACTCGCCGTGCTGCTGAAAGACGCGGGACAGGTACGTGGAAGCTTTCAGGTTTTAGGCAGCATCCAGCTTCCAGGTATTGCTGAAGAAGTGAGGAACTACACGGCCGCGTACGACGTCTTACTGACCGTCGCTGATCAGTCTCGCCAGTCGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCCGGACAGTGCAGGAACCTCGCCGCGGCCGCGTATGACGTGCTGCTGAAGGATGCCAGACAGGTCTCTCTGCAGTGCAGCAACCCTGTCTGCGCCACTTATGACATGTTGCTCAAGGAAGAGACTCAGGTACGTGGCAGGCTTCAGTCTCGCCAATCGCGCCGAATCGGAATTCTCCCATGGAAGTTTCCTTCCTTTATAGAAGATACTAGGGCATTAGAGGTCCAGGTACGTGGCAGGCTTCAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGACGCCGGACAGGTCGCTCTGCAGCGCAGGAACCTCGCCGCGACTGCGTATGACGTGCTGCTGAAGGATGCCGGACAGTGTAGGAACCTTGCCGCGGCTGCATATGACGTGCTGCTGAACGATGCTGGACAGGTACGTGGCAGGCTTCAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGATGCTGGACAGGCTCAGTCTCGCCAGTGGGCGGGCTGTTCGCTCTGCCGCGTGGTGCTCCCGGACGGCGCTACGTCGGTGGTGGGCGTGGAGCCGGGCGTGCCGGTGCGGCGCCTGGTGGAGCGCCTGCTGCAGCGCCGGaacctcgccgccgccgcctatgACGTGCTGCTGAAGGATGCTGGACAGGGCGAGTCGGCAACCATCGACCTATCCTCTCCATCGACCATTATCGGCGGGCGTGAAGTAGTGGTTGAACGTCGCGCGGTCGTACGAGTGGAATTAGCTGGACGCGTGGTGGCCGTTAGATGTAGACCCGCGCGCCGGTTGAGACATGTTCTGAGGCCGGTGTTAGCAAGATACGCGCCTGCACACGCCTTGGTCACACAAAGATTGGTGCTAAGAGACGGCTGCCATGTCCATCCTGATACGCTCATGCAGGCTATGAAGCCATTAGTTATTAAGCTAGCCGGGCGAGTGGTGGTAGTGAAATGTAGGCCCGCGCGCTGCTTGAGACATGTTCTGAGGCCGGTGTTAGCGAGATACGCGCCCGCGCACGCGCTAGTCACACAAAGACTCGTGCTAAGGGACGGCTGCCATGTCCATCCTGATACGCTTATGCAGACACGTAAAGGCAACGCGCCCGCGTCTTCCACATAG
- Protein Sequence
- MSLAISTSNLPSPLLQVVKSSQSAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQVALQRRNLAAAAYDVLLKDAGQVRGRLQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQRRNLAAAAYDVLLKDAGQVALQCRNLAAAYDVLLKDAGQVALQRRNLAAAAYDVLLKDAGQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQLSLISPCIIPEICAAYDVQLKDDAQIHIIQLSSLAKVAQEHWSGTDGAEEDIDGRYQQHPTSSLAMESPCSAATLPAPLMTCCSRKRHLEETRALEVQVRGRLQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQVCRLEWLSGRRRILIKQAVSPLSLQCRNLAAAAYDVLLKDAGQVSLQCGNLACATYDMLLKEETLRLQSRQSAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQRRKLAVLLKDAGQVRGSFQVLGSIQLPGIAEEVRNYTAAYDVLLTVADQSRQSAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQCRNLAAAAYDVLLKDARQVSLQCSNPVCATYDMLLKEETQVRGRLQSRQSRRIGILPWKFPSFIEDTRALEVQVRGRLQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQVALQRRNLAATAYDVLLKDAGQCRNLAAAAYDVLLNDAGQVRGRLQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQAQSRQWAGCSLCRVVLPDGATSVVGVEPGVPVRRLVERLLQRRNLAAAAYDVLLKDAGQGESATIDLSSPSTIIGGREVVVERRAVVRVELAGRVVAVRCRPARRLRHVLRPVLARYAPAHALVTQRLVLRDGCHVHPDTLMQAMKPLVIKLAGRVVVVKCRPARCLRHVLRPVLARYAPAHALVTQRLVLRDGCHVHPDTLMQTRKGNAPASST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -