Onub029031.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979760.1:10073316-10076210[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.52 47 5.7 1.2 1 21 191 211 191 212 0.94 2 17 8.6e-05 0.0077 17.6 2.3 1 23 225 247 225 247 0.97 3 17 5.1 4.5e+02 2.6 0.2 2 23 251 272 251 272 0.88 4 17 1.3 1.1e+02 4.4 2.0 3 23 279 300 277 300 0.93 5 17 0.012 1.1 10.8 0.3 2 23 355 377 354 377 0.96 6 17 0.045 4 9.0 6.3 1 23 383 406 383 406 0.96 7 17 0.0013 0.12 13.9 0.4 1 21 410 430 410 431 0.94 8 17 0.0014 0.12 13.8 0.6 1 23 439 462 439 462 0.96 9 17 0.0021 0.19 13.2 1.5 1 23 467 490 467 490 0.95 10 17 0.0013 0.11 13.9 0.4 3 23 504 524 502 524 0.96 11 17 0.073 6.6 8.3 3.2 1 23 530 552 530 552 0.98 12 17 0.00074 0.066 14.6 3.9 2 23 589 610 588 610 0.96 13 17 0.65 59 5.4 0.1 2 23 615 636 614 636 0.91 14 17 0.0021 0.19 13.2 0.3 2 23 654 676 653 676 0.96 15 17 0.00011 0.0097 17.3 2.5 1 23 682 704 682 704 0.99 16 17 0.00022 0.02 16.3 4.5 3 23 712 732 711 732 0.98 17 17 0.00091 0.082 14.3 0.8 1 23 738 761 738 761 0.89
Sequence Information
- Coding Sequence
- ATGATCAAACGAGACGCGCCGCCCGCGCGGCGATCGGTTAGTCAGCAAATACTTGCAAGCTTTTACCTCTGCAGCAACTGTACGGAAAAATCCATCCAGTCATACCTCTTCATTTACAACGCTAAACAACTCTCGAAGATAATATACGAGTGTATGAACGAGTTGTACTCCAAAACTGTGGACGTCCAAAATCAGTTGCAATCGTTAGACGATTGTGATGCCAATGTTGTTATTGTATTGGAACAAGAACATGAAATGAGTAAGTATACTGAAATTGGGAAAATGACAGAAATTATAGCTAAAGAAACTTCGAAAAATAATGCTTCAATATCAAGTAACACTAAACAAACTGATGAACAAACTGAAAATCACTTTACAACTGAAATAGTGAGGCCAATAGAAATAGAAGAAATTCACATAAACAATGATGAAGATATAAATAATCAAGATATAGAAATTACATTTATAGAAGAGGAAATTCAATCGTCTGAATTTGAGATAGATAAAGAGTACTCACAAGTTAAAACTGTCGTTACATCTCAAAAGAAAAAGACAATACCCTCTATAACATACAAGTGTACCAGATGTAGAGAAGTACTACCATCTTACAAAAGTTATAAAGATCATAAGAAAATGTGTAGAAAACGATTAACAGGTTCTAATAAGCTGCTATTCAATTGCAAAGTTTGCAATGAAAAATTTGTTACGCAAAGATCTTTAAACACTCATTATAAATTGCATTCGAAAGCTAAATGTAAGGTCTGCCAATTTATAGTCCCTGAAGAGGATATGACAGAGCACATGAGAATCAACCACGAAGAGTACGCCCATCTCTGCAAATTATGCAATTTCTTCTCTTTTTCTGCCAAAGGATTAGAAACGCACATAGAAAAGAACCACAGCGGACCTCAGTGTGCTTTATGTTTCAAGAAAGTCAAAGGAAAAGACTTAAAACTGCATAAATGCAAATTCAACTGCTTAGAATGTTTAGACAATGTCTGTATTCATTATAAATACCTGGTCTCGCACAGAGAGCAGGTACTACAGAAGGCCACTAAAATACAATGCGTTGACTGTGATTATGTCTGCTATAGGAGAGAAGCGTTGCTCGGTCACGTTAACAGAGAACATTTAGACCATCATCCATTCACTTGCGCTCATTGTGAACAGCAATTTTACTCGCGAACCACTTTGAGGTACCATATAAACCACTTCCACAAGGAGAGACACGTTTGCGAGTATTGCGACCAGGAGTTCGGCTCTAAAGTCACTTTGGAAAACCACAGAAAGCTTTGTCAATGCATAGAAAAAGACTACAAATGTGATCAATGTAAAAGTTCCTTTGAAACTTTAGAAGAATTAGTCAATCATGTGAAGTTAAGACATGCTGATGAGGCCTTTGACTGTAATTTGTGTGAAAAGAAGTTCTTGAATAGCTCGAAATTGCAAGATCACATGTTTAAAGTGCACAGCGGGATTCAGATTAAGAAAAAGAGATCTCTCCTGGACTGCCCTATCTGTGAAGAGAAATGTGATAATAAAAGACAGTTGCTTCAGCACATAGAAATACACGGCCCAGACGCAAGGTTCCCTTGTAAGGAATGCGATATGGAGTTCGATTGTATCAGAAAACTACACCGTCATATCCGCATACATTACGACGATGTGATTCAGTGTGTCGACTGCAAGAAAGTGTTGACCAAAACGTTTTTTCCGCACCACTCTGTATATTGCAACGTTGGTCGTGAGGGGAACGAAGTCTGTACATGTGAGACTTGCGGTAAAACCTTTACTACTGAAGTCCAGTTTAAGTTCCATATGAAAGTCCATCTGGAGAAAGTGCCGTGTCCGATATGCAAGAAGCCAACGAAGCCGATTTATATGAAAGGTCATATCAAACGAATGCATGGGAAGCCAAGGACACCTAAAGTGCCAAAGCCAAAGTATGTGAAGAACGTGAAATGTGACTGGTGTGGACACATGGTGTCTCGGCTGGGTGAATTGGAGACTCATGTCAATAGATTCCATTTAAAAGTGAAGCCGTATCAATGCAAATATTGTCAGAAGACATTTTTCGGCAAGGAGCGTTTGAGGGACCACCTTATAACGCATACAACATCGAGGGCAGTTGACTGTAACATTTGCAATCAGAGATTCGAAAATAAACAGTGTCTGAAGCTCCATATGAGGAAACATACTGGTGTGAAGCCATATACTTGTGAGATCTGCGGCGAAAGTTTTAGGACGTCTAGTATAATGAATACCCATAAAGTTAAAAAACATTCGGAAAGGACAGTAGCGTGTCCGCTTTGCGATGCGATGTTCCACTTGACTAGAGAGATGAGGTGTCATTTCAAAAAGGTCCATTGGAAGCAAAAGAACAGGAAATTCGATCCAAGAGAGGTGAAGGAATTAAGTCCGGCATTTTACCATCTTTTTGGAGATGGGAGATTGCCCAAAGTAGAGGGCGAAGAGTTGTATATCTCTTCAAAGTTTAATGAGAAGTTTGGTTGA
- Protein Sequence
- MIKRDAPPARRSVSQQILASFYLCSNCTEKSIQSYLFIYNAKQLSKIIYECMNELYSKTVDVQNQLQSLDDCDANVVIVLEQEHEMSKYTEIGKMTEIIAKETSKNNASISSNTKQTDEQTENHFTTEIVRPIEIEEIHINNDEDINNQDIEITFIEEEIQSSEFEIDKEYSQVKTVVTSQKKKTIPSITYKCTRCREVLPSYKSYKDHKKMCRKRLTGSNKLLFNCKVCNEKFVTQRSLNTHYKLHSKAKCKVCQFIVPEEDMTEHMRINHEEYAHLCKLCNFFSFSAKGLETHIEKNHSGPQCALCFKKVKGKDLKLHKCKFNCLECLDNVCIHYKYLVSHREQVLQKATKIQCVDCDYVCYRREALLGHVNREHLDHHPFTCAHCEQQFYSRTTLRYHINHFHKERHVCEYCDQEFGSKVTLENHRKLCQCIEKDYKCDQCKSSFETLEELVNHVKLRHADEAFDCNLCEKKFLNSSKLQDHMFKVHSGIQIKKKRSLLDCPICEEKCDNKRQLLQHIEIHGPDARFPCKECDMEFDCIRKLHRHIRIHYDDVIQCVDCKKVLTKTFFPHHSVYCNVGREGNEVCTCETCGKTFTTEVQFKFHMKVHLEKVPCPICKKPTKPIYMKGHIKRMHGKPRTPKVPKPKYVKNVKCDWCGHMVSRLGELETHVNRFHLKVKPYQCKYCQKTFFGKERLRDHLITHTTSRAVDCNICNQRFENKQCLKLHMRKHTGVKPYTCEICGESFRTSSIMNTHKVKKHSERTVACPLCDAMFHLTREMRCHFKKVHWKQKNRKFDPREVKELSPAFYHLFGDGRLPKVEGEELYISSKFNEKFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124924;
- 90% Identity
- iTF_01124924;
- 80% Identity
- -