Ofur010434.1
Basic Information
- Insect
- Ostrinia furnacalis
- Gene Symbol
- -
- Assembly
- GCA_004193835.1
- Location
- NW:201733-208616[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.44 22 5.6 1.2 1 21 251 271 251 272 0.94 2 17 7.2e-05 0.0035 17.5 2.3 1 23 285 307 285 307 0.97 3 17 4.2 2.1e+02 2.4 0.2 2 23 311 332 311 332 0.88 4 17 1.1 53 4.3 2.0 3 23 339 360 337 360 0.93 5 17 0.0099 0.49 10.7 0.3 2 23 415 437 414 437 0.96 6 17 0.038 1.9 8.9 6.3 1 23 443 466 443 466 0.96 7 17 0.0011 0.054 13.8 0.4 1 21 470 490 470 491 0.94 8 17 0.0009 0.045 14.0 0.5 1 23 499 522 499 522 0.96 9 17 0.0018 0.089 13.1 1.5 1 23 527 550 527 550 0.95 10 17 0.0011 0.053 13.8 0.4 3 23 564 584 562 584 0.96 11 17 0.061 3 8.2 3.2 1 23 590 612 590 612 0.98 12 17 0.00062 0.03 14.5 3.9 2 23 649 670 648 670 0.96 13 17 0.55 27 5.2 0.1 2 23 675 696 674 696 0.91 14 17 0.0018 0.089 13.1 0.3 2 23 714 736 713 736 0.96 15 17 9e-05 0.0045 17.1 2.5 1 23 742 764 742 764 0.99 16 17 8e-05 0.0039 17.3 4.0 2 23 771 792 770 792 0.97 17 17 0.00076 0.038 14.2 0.8 1 23 798 821 798 821 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAAGACATTAACATCTTAAATACTCATCCTGAAAGTCAAGACCGTAGCAATGTTCAACGTTTGAAGCTGAAACTTGCCACTATATGCCAAGCGCAGAGATTTTGCGGAATTTGCTTGGAGAGCTCGGACAAACTGTGGTCCATCGATACAGAGTTTGATATTGCTGTTAGTCAGTCAACACATAAAAAACTACTGAAGGATATTATTGACTACATTCTCAATGATGAAAGTCAGCAAATACTTGCAAGCTTTTACCTCTGCAGCAACTGTACGGAAAAATCCATCCAGTCATACCTCTTCATTTACAACGCTAAACAACTCTCCAAGATAATATACGAGTGTATGAACGAGTTGTACTCCAAAACTGTGGACGTCCAAAATCAGTTGCAATCGTTAGACGATTGTGATGCCAACGTTGTTATTGTATTGGAACAAGAACATGAAATGAGCAAGTATACTGAAATTGGGAAAATGACTGAAATTATAGCTAAAGAAACTTCGAAAAATGATGCTTCAATATCAAGTAACACTAAACAAACTGAAAATAACTTTACAACTGAAATAGTGAGGCCAATAGAAATAGAAGAAATTCACATAAATAATGATGAAGATATAAATAATCAAGATATAgaaattacatttatagaaGAGGAAATTCAGTCATCAGAATTTGAGATAGATAAAGAGTACTCTCAAGTTAAAACTATAGTATCTCAGAAGAAAAAGACAATACCCTCTATAACATACAAGTGTACCAGATGCAGAGAAGTTCTACCATCTTATAAAAGTTACAAAGATCATAAGAAAATGTGTAGGAAACGATTAACAGGCCCTAATAAGCTGCTATTCAATTGCAAGGTTTGCAATGAAAAATTTGTTACACAGAGGTCTTTAAacactcattataaattgcatTCGAAAGCAAAATGTAAGGTCTGCCAATTCATAGTCCCCGAAGAGGATATGACAGAGCACATGAGAATCAACCACGAAGAGTACGCTCATCTCTGCAAATTATGCAATTTCTTCTCTTTTTCTGCCAAAGGATTAGAAACGCACATAGAAAAGAACCACAGCGGACCTCAATGTGCTTTATGTTTCAAGAAAGTCAAAGGAAAAGACTTAAAACTGCATAAATGCAAATTCAACTGCTTAGAATGTTTAGACAATGTCTGTATTCATTATAAATACCTGGTCTCGTACAGAGAGCAGGTACTACAGAAGGCCACTAAAATACAATGCGTTGACTGTGATTATGTCTGCTATAGGAGAGAAGCGTTGCTCGGTCACGTTAACAGAGAACATTTAGACCATCATCCATTCACTTGCGCTCATTGTGAACAGCAATTTTACTCGCGAACCACTTTGAGGTACCATATAAACCACTTCCACAAGGAGAGACACGTTTGCGAGTATTGCGACCAGGAGTTCGGCTCTAAAGTCACTTTGGAAAACCACAGAAAGCTTTGTCAATGCATAGAAAAAGACTACAAATGTGATCAATGTAAAAGTTCCTTTGAAACTTTAGAAGAATTAGCCAATCATGTGAAGTTAAGACATGCTTATAAGGCCTTTGACTGTAATTTGTGTGAAAAGAAGTTCTTGAATAGCTCGAAATTGCAAGATCACATGTTTAAAGTGCACAGCGGGATTCAGATTAAGAAAAAGAGATCTCTCCTGGACTGCCCTATCTGTGAAGAGAAATGTGATAATAAAAGACAATTGCTCCAGCACATAGAAATACACGGACCAGACGCAAGGTTCCCTTGTAAAGAATGTGATATGGAGTTCGATTGTATCAGAAAACTACACCGTCATATCCGCATACATTACGACGATGTGATTCAGTGTGTCGACTGCAAGAAAGTGTTGACCAAAACGTTTTTTCCGCACCACTCTGTATATTGCAACGTTGGTCGTGAGGGTAATGAAGTCTGTACATGTGAGACTTGCGGTAAAACTTTTACTACTGAAGTCCAGTTTAAGTTCCATATGAAAGTACATCTGGAGAAAGTGCCGTGTCCGATATGCAAGAAGCCAACGAAGCCGATTTATATGAAAGGTCATATCAAACGAATGCATGGGAAGCCAAGGACACCTAAAGTGCCAAAGCCAAAGTATGTGAAGAACGTGAAATGTGACTGGTGTGGACACATGGTGTCTCGGCTGGGTGAATTGGAGACTCACGTCAATAGATTCCATTTAAAAGTGAAGCCGTATCAATGTAAATATTGTCAGAAGACCTTTTTCGGTAAGGAGCGTTtgagggaccacctcataacgCATACATCATCGAGGGCAGTTTACTGTAACATTTGCAATCAGAGATTTGAAAATAAACAGTGTCTGAAGCTCCATATGAGGAAACATACCGGTGTGAAGCCATATACTTGTGAGATCTGCGGCGAAAGTTTTAGGACGTCTAGTATAATGAATACCcataaagttaaaaaacatTCGGAAAGGACAGTGGCGTGTCCGCTTTGCGATGCGATGTTCCACTTGACTAGAGAGATGAGGTGTCATTTCAAAAAGGCCCATTGGAAGCAAAAGAACAGGAAATTCGATCCAAGAGAGGTGAAGGAATTAAGTCCGGCATTTTACCATCTTTTTGGAGATGGGAGATTGCCCAAAGTAGAGGGCGAAGAGTTGTATATCTCTTCAAAGTTTAATGAGAAGTTTGGTTGA
- Protein Sequence
- MEEDINILNTHPESQDRSNVQRLKLKLATICQAQRFCGICLESSDKLWSIDTEFDIAVSQSTHKKLLKDIIDYILNDESQQILASFYLCSNCTEKSIQSYLFIYNAKQLSKIIYECMNELYSKTVDVQNQLQSLDDCDANVVIVLEQEHEMSKYTEIGKMTEIIAKETSKNDASISSNTKQTENNFTTEIVRPIEIEEIHINNDEDINNQDIEITFIEEEIQSSEFEIDKEYSQVKTIVSQKKKTIPSITYKCTRCREVLPSYKSYKDHKKMCRKRLTGPNKLLFNCKVCNEKFVTQRSLNTHYKLHSKAKCKVCQFIVPEEDMTEHMRINHEEYAHLCKLCNFFSFSAKGLETHIEKNHSGPQCALCFKKVKGKDLKLHKCKFNCLECLDNVCIHYKYLVSYREQVLQKATKIQCVDCDYVCYRREALLGHVNREHLDHHPFTCAHCEQQFYSRTTLRYHINHFHKERHVCEYCDQEFGSKVTLENHRKLCQCIEKDYKCDQCKSSFETLEELANHVKLRHAYKAFDCNLCEKKFLNSSKLQDHMFKVHSGIQIKKKRSLLDCPICEEKCDNKRQLLQHIEIHGPDARFPCKECDMEFDCIRKLHRHIRIHYDDVIQCVDCKKVLTKTFFPHHSVYCNVGREGNEVCTCETCGKTFTTEVQFKFHMKVHLEKVPCPICKKPTKPIYMKGHIKRMHGKPRTPKVPKPKYVKNVKCDWCGHMVSRLGELETHVNRFHLKVKPYQCKYCQKTFFGKERLRDHLITHTSSRAVYCNICNQRFENKQCLKLHMRKHTGVKPYTCEICGESFRTSSIMNTHKVKKHSERTVACPLCDAMFHLTREMRCHFKKAHWKQKNRKFDPREVKELSPAFYHLFGDGRLPKVEGEELYISSKFNEKFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125804;
- 90% Identity
- iTF_01125804;
- 80% Identity
- -