Onub010424.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- -
- Assembly
- GCA_963855985.1
- Location
- OY979740.1:4933033-4942946[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.54 11.8 3.4 1 22 213 234 213 234 0.96 2 12 0.16 15 7.2 0.3 2 23 252 273 251 273 0.94 3 12 0.49 44 5.8 0.1 2 23 280 301 279 301 0.95 4 12 4.9 4.4e+02 2.6 0.4 1 8 310 317 310 318 0.93 5 12 0.025 2.2 9.8 3.4 3 23 342 362 342 362 0.98 6 12 0.04 3.6 9.2 0.5 1 10 367 376 367 387 0.78 7 12 2.7e-05 0.0025 19.1 0.2 1 23 395 418 395 418 0.97 8 12 0.00097 0.087 14.2 2.3 2 20 424 442 424 444 0.93 9 12 0.00053 0.047 15.1 6.4 1 23 451 473 451 473 0.97 10 12 1.2e-06 0.00011 23.4 0.8 1 23 479 501 479 501 0.99 11 12 2e-05 0.0018 19.6 0.5 1 23 507 529 507 529 0.97 12 12 0.032 2.8 9.5 6.1 1 19 535 553 535 558 0.91
Sequence Information
- Coding Sequence
- ATGCCAAAAGATTATTTTCCTTATAAATCTTGTCGTATCTGTCTGGTTAAAGACTCAAAGTATTCAAAATTTGTGACCTTTGACTATAGTGGAGGATGGCTAGCAATGTACGAGTTTTGTTTTGGTTTGACTatATCTACCGAGGATGTGCCCCGGATACTATGTAATTCTTGTGCTGGTAAAATGAAAGATTTTAACACATTCAAACTACAAGCCCAAAAATCTGATAAATTGTGGAAAACAATAGCTAATATTACACCAGGGAGTGTGatagaGAATTGTCAACAAGATGTTGAGAACAAATCTAGCTTATTACCTATACAAGAAGAATGTGAGGAAGTAAATTTAATTTCTTCTGATAGTGATGTTTGGCCTGAAGATGACAAGGAATCATGTGAAATTTTAATagtaaagaaagaagaaaaaccTGCTAATGGGGTTCAGTCGGAAACGGATAGTGACTATGACCTTACAGAATTTGAGAAATTTGAAATTTTGGAAGAAGAAAAACCTGCTAATGGGGTTCAGTCGGAAACGGATAGTGACTTTGACCTTACAGAATTTGAGAAATTTGAAATTTTGGAAGAAACGAACAATTTGGAAGAAATCAACAATgacgataaaaaaaataaagtgtaTACGTGTCCAAAATGTAACATGCAGTACAAACGGTTGAAATTCTATAAGAAGCATTTGAAGAAACCTGATTGCAAAGCTGTACCAGTACCGAAAAAAGTGGAACAAAAGGAGTTATATTGTGGATTATGCGAAACGTGGTGTCCAGATTCTGAATCACTAAATAAACATATAAATGAACATAGCACCAAGGATGATTTATCTTGCGGCTTGTGTGATTACGTTGGCAGAGATTTTGCTGATATGGAGACGCACAGATTCAGTCACCAGCGAAAAGATGGTCCTAGATCGTATATTTGCCACTTATGTGGCAAATTGCATTGTGCTCTCCTAGTTCTCCAGTTTCACTACAGGACAGTGCACCTGAACAAAACGAACGGTGGTTGGTGTTCTTATTGCAATAAGGAATTCCGCACATACATAAAGTGGAGGGACCATGAGAGACACCACAGATCTCCAAAATACATCTGTGATCACTGTGGGAAAacATTCTTATATAGGGCTACGATAATAACTCATTTCCAAGATATTGTTAATGAAAATGCCTTTATTTGCGATGTTTGTGGAAAAGGATTTAAACGGGGTAGAGCCCTTAAGCTCCACCAAGAGACGATGCACGACACAGTTCAAGCCACGTGTACACACTGTAACAAAGTGTTCAGAAACCAGAAGCACGTCGACTTACACATGGTCAAATTGTCCAAGCAAAAATCGCACCAATGCCACGTCTGCTCCAAGTTGTTCTTCACGCCTTTCCATTTGAAGAGGCACATGGCTTGGCATTTCGACGATAGGCCGTACAAATGCGAAATTTGCGACGCTTCTTACAAAGTTAAAAACCAGTTGACGATCCATATGCGCAAACACAGCGGGTTCATGCCGCACAAGTGCACAATTTGCCCCAAAGAGTTTGCGACGACGCCGCAATTAAGAGTGCATCTGTCTGTGCACTCGGGGATGAGGCGGCACAAATGCCCGTATTGCGAAAGGAGTTTCCACAACAGAAAGGATTTGGTGCTGCATTGCGCTAAACGTCATTATGTGTCGGACTTCAAAATAAGCGGCGAGAAGAAAGATGTAGAAAGCTAA
- Protein Sequence
- MPKDYFPYKSCRICLVKDSKYSKFVTFDYSGGWLAMYEFCFGLTISTEDVPRILCNSCAGKMKDFNTFKLQAQKSDKLWKTIANITPGSVIENCQQDVENKSSLLPIQEECEEVNLISSDSDVWPEDDKESCEILIVKKEEKPANGVQSETDSDYDLTEFEKFEILEEEKPANGVQSETDSDFDLTEFEKFEILEETNNLEEINNDDKKNKVYTCPKCNMQYKRLKFYKKHLKKPDCKAVPVPKKVEQKELYCGLCETWCPDSESLNKHINEHSTKDDLSCGLCDYVGRDFADMETHRFSHQRKDGPRSYICHLCGKLHCALLVLQFHYRTVHLNKTNGGWCSYCNKEFRTYIKWRDHERHHRSPKYICDHCGKTFLYRATIITHFQDIVNENAFICDVCGKGFKRGRALKLHQETMHDTVQATCTHCNKVFRNQKHVDLHMVKLSKQKSHQCHVCSKLFFTPFHLKRHMAWHFDDRPYKCEICDASYKVKNQLTIHMRKHSGFMPHKCTICPKEFATTPQLRVHLSVHSGMRRHKCPYCERSFHNRKDLVLHCAKRHYVSDFKISGEKKDVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124861;
- 90% Identity
- iTF_01124861;
- 80% Identity
- -