Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:100849-109807[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0046 0.23 11.8 3.4 1 22 213 234 213 234 0.96

2 12 0.13 6.3 7.2 0.3 2 23 252 273 251 273 0.94

3 12 0.38 19 5.8 0.1 2 23 280 301 279 301 0.95

4 12 3.8 1.9e+02 2.6 0.4 1 8 310 317 310 318 0.93

5 12 0.019 0.95 9.8 3.4 3 23 342 362 342 362 0.98

6 12 0.013 0.65 10.3 0.2 1 20 367 386 367 388 0.82

7 12 1.5e-06 7.4e-05 22.8 0.2 1 23 395 418 395 418 0.97

8 12 0.0016 0.08 13.2 1.6 2 20 424 442 424 444 0.93

9 12 0.00041 0.02 15.1 6.4 1 23 451 473 451 473 0.97

10 12 9.6e-07 4.7e-05 23.4 0.8 1 23 479 501 479 501 0.99

11 12 1.5e-05 0.00076 19.6 0.5 1 23 507 529 507 529 0.97

12 12 0.034 1.7 9.0 6.4 1 19 535 553 535 558 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0046	0.23	11.8	3.4	1	22	213	234	213	234	0.96
2	12	0.13	6.3	7.2	0.3	2	23	252	273	251	273	0.94
3	12	0.38	19	5.8	0.1	2	23	280	301	279	301	0.95
4	12	3.8	1.9e+02	2.6	0.4	1	8	310	317	310	318	0.93
5	12	0.019	0.95	9.8	3.4	3	23	342	362	342	362	0.98
6	12	0.013	0.65	10.3	0.2	1	20	367	386	367	388	0.82
7	12	1.5e-06	7.4e-05	22.8	0.2	1	23	395	418	395	418	0.97
8	12	0.0016	0.08	13.2	1.6	2	20	424	442	424	444	0.93
9	12	0.00041	0.02	15.1	6.4	1	23	451	473	451	473	0.97
10	12	9.6e-07	4.7e-05	23.4	0.8	1	23	479	501	479	501	0.99
11	12	1.5e-05	0.00076	19.6	0.5	1	23	507	529	507	529	0.97
12	12	0.034	1.7	9.0	6.4	1	19	535	553	535	558	0.91

Sequence Information

Coding Sequence: ATGCCAAAAGATTATTTTCCTTATAAATCTTGTCGTATCTGTCTGGTTAAAGACTCAAAGTATTCAAAATTTGTGACCTTTGACGATAGTGGAGGATGGCTAGCAATGTACGAGTTTTGTTTTGGTTTGACTataTCTACCGAGGATGTACCCCGGATACTATGTAATTCTTGTGCTGGTAAAATGAAAGATTTTAACACATTCAAACTACAAGCCCAAAAATCTGATAAATTGTGGAAAACAATAGCTAATATTACACCAGGGAGTGTGatagaGAATTGTCAACAAGATGTTGAGAACAAATCTAGCTTATTACCTATACAAGAAGAATGTGAGGaagtaaatttaatttcttCTGATAGTGATGTTTGGCCTGAAGATGACAAGGAATCATGTGAAATTTTAATagtaaagaaagaagaaaaaccTGCTAATGGGGTTCAGTCGGAAACGGATAGTGACTATGACCTTACAGAACTTGAGAAATTTGAAATTTTGGAAGAAGAAAACCCTGCTAATGGGGTTCAGTCGGAAACGGATAGTGACTTTGACCTTACAGAATTTGAGAAATTTGAAATTTTGGAAGAAACGAACAATTTGGAAGAAATCAAAAAtgacgataaaaaaaataaagtgtatACGTGTCCAAAATGTAACATGCAGTACAaACGGTTGAAATTCTATAAGAAGCATTTGAAGAAACCTGATTGCAAAGATGTACCAGTACCGAAAAAAGTGGAACAAAAAGAGTTATATTGTGgaTTATGCGAAACGTGGTGTCCAGATTCTGAATCACTAAATAAACATATAAATGAACATAGCACCAAGGATGATTTATCTTGCGGCTTGTGTGATTACGTTGGCAGAGATTTTGCTGATATGGAGACGCACAGATTTAGTCACCAGCGAAAAGATGGTCCTAGATCGTATATTTGCCACTTATGTGGCAAATTGCATTGTGCTCTCCTAGTTCTCCAGTTTCACTACAGGACAGTGCACCTGAACAAAACGAACGGTGGTTGGTGTTCTTATTGCAATAAGGAATTCCGCACATACATAAAGTGGAGGGACCATGAGAGACACCACAGATCTTCAAAATACATCTGTGATCACTGTGGGAAAacATTCTTATATAGGGCTACGATAATAACTCATTTGCAAGATATTGGTAATGAAAATGCCTATATTTGCGATGTTTGTGGAAAAGGATTTAAACGGGCTAGAGCCCTTAAGCTCCACCAAGAGACCATGCACGACACAGTTCAAGCCACGTGTGCACACTGTAACAAAGTGTTCAGAAACCAGAAGCACGTCGACTTACACATGGTCAAATTGTCCAAGCAAAAATCGCACCAATGCCACGTCTGCTCCAAGTTGTTCTTCACACCTTTCCATTTGAAGAGGCACATGGCTTGGCATTTCGACGATAGGCCGTACAAATGCGAAATTTGCGACGCTTCTTACAAAGTTAAAAACCAGTTGACGATCCATATGCGCAAACACAGCGGGTTCATGCCGCACAAGTGCACAATTTGCCCCAAAGAGTTTGCGACGACGCCGCAATTAAGAGTGCATCTGTCTGTGCACTCGGGGATGAGGCGGCACAAATGCCCGTATTGCGAAAGGAGTTTCCACAACCGAAAGGATTTGGTGCTGCATTGCGATAAACGTCATTATGTGTCGGACTTCCAAATAAGCGGCGAGATGAAAGATGTAGAAAGCTAA
Protein Sequence: MPKDYFPYKSCRICLVKDSKYSKFVTFDDSGGWLAMYEFCFGLTISTEDVPRILCNSCAGKMKDFNTFKLQAQKSDKLWKTIANITPGSVIENCQQDVENKSSLLPIQEECEEVNLISSDSDVWPEDDKESCEILIVKKEEKPANGVQSETDSDYDLTELEKFEILEEENPANGVQSETDSDFDLTEFEKFEILEETNNLEEIKNDDKKNKVYTCPKCNMQYKRLKFYKKHLKKPDCKDVPVPKKVEQKELYCGLCETWCPDSESLNKHINEHSTKDDLSCGLCDYVGRDFADMETHRFSHQRKDGPRSYICHLCGKLHCALLVLQFHYRTVHLNKTNGGWCSYCNKEFRTYIKWRDHERHHRSSKYICDHCGKTFLYRATIITHLQDIGNENAYICDVCGKGFKRARALKLHQETMHDTVQATCAHCNKVFRNQKHVDLHMVKLSKQKSHQCHVCSKLFFTPFHLKRHMAWHFDDRPYKCEICDASYKVKNQLTIHMRKHSGFMPHKCTICPKEFATTPQLRVHLSVHSGMRRHKCPYCERSFHNRKDLVLHCDKRHYVSDFQISGEMKDVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01125782;
90% Identity: iTF_01125782;
80% Identity: -