Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979736.1:15397129-15412511[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 1.4e-05 0.0012 20.1 0.9 1 23 202 224 202 224 0.99

2 32 0.00086 0.078 14.4 1.0 2 20 254 272 253 274 0.93

3 32 0.00024 0.022 16.2 0.3 2 23 304 326 303 326 0.96

4 32 0.5 45 5.7 0.5 1 23 375 398 375 398 0.95

5 32 0.016 1.4 10.5 0.1 1 23 414 436 414 436 0.95

6 32 0.002 0.18 13.2 4.5 2 23 479 501 478 501 0.95

7 32 0.0053 0.48 11.9 3.6 2 23 519 541 519 541 0.96

8 32 0.0034 0.3 12.5 4.5 2 23 559 581 559 581 0.96

9 32 0.0034 0.3 12.5 4.5 2 23 599 621 599 621 0.96

10 32 0.0012 0.11 14.0 4.2 2 23 665 687 665 687 0.97

11 32 0.065 5.9 8.5 1.0 1 23 737 760 737 760 0.95

12 32 0.043 3.9 9.1 0.2 1 23 815 837 815 837 0.97

13 32 0.0067 0.6 11.6 4.1 2 23 849 870 848 870 0.96

14 32 0.043 3.9 9.1 1.5 2 23 882 903 881 903 0.96

15 32 0.0041 0.37 12.3 2.2 1 23 913 935 913 935 0.98

16 32 0.0061 0.55 11.7 5.4 2 23 965 986 965 986 0.97

17 32 0.00065 0.058 14.8 2.5 1 23 997 1019 997 1019 0.98

18 32 6.2e-05 0.0055 18.0 0.5 1 23 1027 1049 1027 1049 0.97

19 32 0.00082 0.074 14.5 0.4 2 23 1069 1091 1068 1091 0.97

20 32 2.4 2.2e+02 3.6 0.7 1 23 1109 1131 1109 1131 0.89

21 32 2.8 2.6e+02 3.3 3.3 1 23 1138 1160 1138 1160 0.90

22 32 0.37 34 6.1 7.6 2 23 1171 1193 1170 1193 0.95

23 32 0.0011 0.096 14.1 0.3 1 23 1215 1237 1215 1237 0.97

24 32 0.025 2.3 9.8 0.6 1 23 1317 1339 1317 1339 0.93

25 32 1.8 1.6e+02 4.0 4.5 5 23 1349 1367 1346 1367 0.94

26 32 0.018 1.6 10.3 0.8 2 23 1378 1400 1377 1400 0.95

27 32 0.17 15 7.2 2.3 2 23 1417 1435 1417 1435 0.91

28 32 0.41 36 6.0 2.3 2 21 1439 1458 1438 1459 0.94

29 32 3.5 3.1e+02 3.1 0.9 2 19 1480 1497 1480 1501 0.92

30 32 0.28 25 6.5 0.4 2 23 1508 1529 1507 1529 0.93

31 32 0.004 0.36 12.3 0.8 2 23 1540 1562 1539 1562 0.96

32 32 0.02 1.8 10.1 3.0 2 20 1600 1618 1599 1620 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	1.4e-05	0.0012	20.1	0.9	1	23	202	224	202	224	0.99
2	32	0.00086	0.078	14.4	1.0	2	20	254	272	253	274	0.93
3	32	0.00024	0.022	16.2	0.3	2	23	304	326	303	326	0.96
4	32	0.5	45	5.7	0.5	1	23	375	398	375	398	0.95
5	32	0.016	1.4	10.5	0.1	1	23	414	436	414	436	0.95
6	32	0.002	0.18	13.2	4.5	2	23	479	501	478	501	0.95
7	32	0.0053	0.48	11.9	3.6	2	23	519	541	519	541	0.96
8	32	0.0034	0.3	12.5	4.5	2	23	559	581	559	581	0.96
9	32	0.0034	0.3	12.5	4.5	2	23	599	621	599	621	0.96
10	32	0.0012	0.11	14.0	4.2	2	23	665	687	665	687	0.97
11	32	0.065	5.9	8.5	1.0	1	23	737	760	737	760	0.95
12	32	0.043	3.9	9.1	0.2	1	23	815	837	815	837	0.97
13	32	0.0067	0.6	11.6	4.1	2	23	849	870	848	870	0.96
14	32	0.043	3.9	9.1	1.5	2	23	882	903	881	903	0.96
15	32	0.0041	0.37	12.3	2.2	1	23	913	935	913	935	0.98
16	32	0.0061	0.55	11.7	5.4	2	23	965	986	965	986	0.97
17	32	0.00065	0.058	14.8	2.5	1	23	997	1019	997	1019	0.98
18	32	6.2e-05	0.0055	18.0	0.5	1	23	1027	1049	1027	1049	0.97
19	32	0.00082	0.074	14.5	0.4	2	23	1069	1091	1068	1091	0.97
20	32	2.4	2.2e+02	3.6	0.7	1	23	1109	1131	1109	1131	0.89
21	32	2.8	2.6e+02	3.3	3.3	1	23	1138	1160	1138	1160	0.90
22	32	0.37	34	6.1	7.6	2	23	1171	1193	1170	1193	0.95
23	32	0.0011	0.096	14.1	0.3	1	23	1215	1237	1215	1237	0.97
24	32	0.025	2.3	9.8	0.6	1	23	1317	1339	1317	1339	0.93
25	32	1.8	1.6e+02	4.0	4.5	5	23	1349	1367	1346	1367	0.94
26	32	0.018	1.6	10.3	0.8	2	23	1378	1400	1377	1400	0.95
27	32	0.17	15	7.2	2.3	2	23	1417	1435	1417	1435	0.91
28	32	0.41	36	6.0	2.3	2	21	1439	1458	1438	1459	0.94
29	32	3.5	3.1e+02	3.1	0.9	2	19	1480	1497	1480	1501	0.92
30	32	0.28	25	6.5	0.4	2	23	1508	1529	1507	1529	0.93
31	32	0.004	0.36	12.3	0.8	2	23	1540	1562	1539	1562	0.96
32	32	0.02	1.8	10.1	3.0	2	20	1600	1618	1599	1620	0.94

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTGGGGAAATGCAGACTTTGTCTGAAGCTTGGCGACTTTTACTCCATCTTCACCGTGGACAATGCCATCCAACTGGCAGAGATGGTCATGGAATGCGCCCGGGTGAAAATCTACGATGGCGACGGGCTTCCCGACAAGATTTGTTCAGAGTGCATACAGAAGCTCAGCAGCGCATACATCTTCAAGCAGCAGTGCGAGCGCTCTGACCAGGAGCTGCGCAGGAATTATGTGCCGCCGCCGGGGTTCAGCATCACGCCCCCACCGCCACAAAACAGACAAAGCAGCGATTCCGCGTTCTCGTCCCAAACTGACATCTCGAACCAGACCAAGCCGTCTTCCTCCAACGAGAGCGCCGTCACGCCGGCCAGTCGCTCGCGCAAGCGCAGCCGCGAGAGCGCCGACAACACCTCCGTCAGTAGTCGTTCCCACGACTACGCGCCCGCCACAAAACGCGTCTCCGAACTCCGCGATTCCCAAAAGAAACGCCGCGTCCAAAACTCCTACGAGGACGACTCCGACTACGAGGATCACATGTCGAACTCCCAGTTCTCCGCCGGCACCGACTCCGACGAGCCGCTCCTCAAAAACTCCTTCAAGTGCAAAAAGTGCGAAAAGTCATTCGCGAGCGCCAAAAGTTTAGCCCTCCACGGCCGGACGCACAAAAAGGACAGCCTCGGCCAGAACGAGGTGGTCAACATCCCGAAACCCGCCCCTTCCGAGGACGCGACCGACGACGACGACAAGCTGTCGTGCGACAAATGCGGGAAGACGTTCAAGCTGAAGATAATGCTGAAGCGGCACCACGACCTGTGCGGCGTGATCACCGAGGTGTCCCCGCAGAAGGAGTTGCTCGTGTCTCTCGAGCCGATCGACGCACCGGTTCACCCGAAAAAGATCGAGTGCGAGATATGCACGTCCAAGTTCAAATCGATCGATAATCTGAACAAGCATTTGCGAGTGGTTCACGCGGCGGCGCCGAAACCGGATCCGTCGCCGGTGAAAGATAAAAAAGTGTCGGTGCCGTGCATATTCTGTCGGAAGCAGTTCGACGACTACTACGTGTATACGGCGCACCACAACAGCTGTAACAAGCGGCGGGAGTTGGACGCGTTCTCGTGTCCGGTGTGTAAGCGGTTGTCGGGGAAGCGCAGCGCGTTCTTCGTTCACGTGAAGAACCTTCATTTCGAGCGCGGGCTGTCTGGGAAGGAGGAGCCTCGGGCGGAGGCGTTCGACTGCCGCGTGTGCAGCAAGCGGCTGGCGTCGCAGGAGCAACTCATCACGCACCTGGCCGCGCATATGTCGCACATTGACGAGCCCGAGGCCGCCGCCGACGACGAGTCCAGGGCCAGCACCTTAGACGATTCTGCATCGATCGCGTCGGCGGACTATACCAGCTCAAAATACGTTTCCAACGGACCTTTAAAGTGTGGTATCTGCGACAAGCGGTTCACGTACAAGAAGGCGCTGGTCACGCACCACGAGCGCTGCCACGCGAATATGGAGCTGCAGGTGAAGGTCGAGCCGCCTGATAAGATGCCTGAGCAGTGTGGTATCTGCGACAAGCGGTTCGTGTACAAGAAGGCGCTGGTCACGCACCACGAGCGGTGCCACGCGAATATGGAGCTGCAGGTGAAGGTCGAGCCGCCTGATAAGATGCCTGAGCAGTGTGGTATCTGCGACAAGCGGTTCACGTACAAGAAGGCGCTGGTCACGCACCACGAGCGCTGCCACGCGAATATGGAGCTGCAGGTGAAGGTCGAGCCGCCTGATAAGATGCCTGAACAGTGTGGTATCTGCGACAAGCGGTTCACGTACAAGAAGGCGCTGGTCACGCACCACGAGCGCTGCCACGCGAATATGGAGCTGCAGGTGAAGGTCGAGCCGCCTGATAAGATGCCTGAACAGGACAATCCGAATCTTCTCAGCGAGACGCGAGCACCTTCCGAATCAGAATCGAGCGACGAGGAAGGCGACGACAACACGTGTGATATATGCGAGAAACATTTCTCATACAAGCGGCTGCTACTGCAACACAAGCGCACCAAACATAACCTGAGCTCGGGGACCAAGCGAGCCAAGATCACGCTCAAAGACTGTTCTGTGAGGTGCCTCATTTGTGACTTGGAAATGAAAGTCAGCGCCATCAACGAGCACAACCAGAAGCACATCTCTGTGAACATCAAGCCGCGCAACGTTTACACGTGCGCCGAGTGCCAGGACAAGTTCAAGAGCTGCAGCGCGCTGGCCGGACACATCAAGTTCGTGCACAGATTAAAACAGCCGCGAGCGCCGAAAGCACCGCGTGCCCTTGAGGGCGGTTCGGAGTTGGCGGATTTTTGCGAGGTCGTTGTGACTAAGGCGGAACCCCTGGACGCGCTCCAGGATCACAACGACCCCGGAGCAGTTCCGCCCAGTGTCAGCGCCGCCGGGTTTACCTGCCCGCTGTGTACTAAACGAATGCCCACGCTGTTGGCTCTCAAGCGACATGTGAATTGGCATACATATCGTGGCAAGGATTTGGAGAAGAATATTGAGTGCGCCGTGTGCAAAGAGACCTTCCGTTTCCAATGCCACTACAAGTTACACATGCGCGGGCACTACCGGGACCCGAACCTGGACCCGGTGCACCTCACGTGCCCCATCTGCAACCGCAAGAGCAAGCATCTAAGGGCAGCTCAGATGCACATGAACTACCACAAGCAGACGCGCTTCAACACCGCCGACTACCAGTGCTCGATCTGCAAGCGAGTCTTCCAGCATCGGAAGgTGTACCTCTCGCACATGGCTATCCACTTCAAGCGCGGCGAGAGCGGTCAGAACACCATCGTCGGTGACGTCACGCCCAACAACGCCGACAAGACGCGCTTCGACGGCACCAACACCTGCCACCTCTGCGGAAAGGTCTGCGACTCCGAAAATTCGCTCAAGCACCACGTGCGATGGCACAACTCCAAGTCTTCCTTGTACGGAGCACGCCACGAGTGCCAGTTCTGCCAATTAGTCTTCACAAACAAGCGCCGTCTAGAAATCCATATAAGATCACATTACGAGGACGACAACGGACCCTTCAAGTGCACTATTTGTGGTAAAGGATACATCGACGAGGAATACTTTCGGAGACACGTTAAAGGACACAACTTCGACCACCAGTCACATAAGGATAGAATCGATAAGTTAAGAAAGGATAAAGTCAAGTGCCCGATCTGCGCTCGCTTCTATCCAGACCTGATCCATTTGATACGTCATCTGAGACGCACCCATCCTGAGAGCAAAATGATCAAGACCGACCCTGATGCGCCGGCGCCGGTCTACTTTTCCTGCAAGCTGTGCGCCAAAGTGTTTCTCGACGAGCGCCGCTTCCAAAAACACGAGGAGGCCCACATGAGAAAGCCGCAGTTCTTCAAATGCAAATTCTGCGGAAAAAACACCATCTCGATGAAAACCCACAACCTTCACATCAAGGGTCACCTAACCCAGAAGTACCTAGACGAACCGCTGAAGTGCATGCACTGCGACGAAAAGTTCTACAAGGGCTACCATTTGCACCACCATTTGAGGGACGCGCACCAGATCAATGAAACGTGGATCGCCGAGCGCACCGAGCCCACTCTTAGCGGGCCTTTGAAAGAGTTCCAGTGCTCAGTTTGCTTGAAGGTGCTCGCCAGCAAAGGAAACTTCGAACGGCACATCGACTACCACAATACCCTGCGCTGCAACTATTGCTTCGACTACTTCAGCACCATCCGCTTCCTGGAAGGCCATCTGGCCTTCAGCTGCGACAAGAAGAAGCTCCTCGGGGACACCGAACCGCATCTAAGGAGGATCAAGTGCCACGTCTGCTACAAAGCCTTCCACTTGCAGGTCAAACTGGACTGTCATTTGCAGACGCGACACGGGATCAAAGTGAATAAAGAAGCGTCGAGCGGGAAAAAGGAGTTCGTCTGCGATTTCTGCTTCCGCGTATTCGAGAATGAGGACTCGCTGACCGGGCATAAGGTCTACCACCGAACCATCGGCTACTACGGCTGCATCTACTGCAAGCGCAAGTTCAACACGCTGACTTTGTACCGCAAGCACAAGAACCACCACTTCTCCCAGCTTAACGTCGACAACCCTACCAAGTGCGAGCACTGCGACGAGACTTTCGTCGCCTTCCGCGAGATGATCTACCACATGCGGGACGTCCATAACGACGACAAGGAGTGGATCGTCATGCCTAAAGACTCTATAGAAGAGACGTGCCCGATATGCAACAAAGTGTTTTTCAATCTACACAGACACTTAGAATACCACGAGGAGAACAAGTGCAAGAAATGCAACGAATACTTCTACTCGCGCGCCGATTACGACAACCACTTATGCTCGATCGAAAGCGACGACGAGGAGGCCGGCCCGAGCGAGAATAGCTCGCTTCCGGCGTATGAAGAGTGCGAGTTCTGCTTCAAGCCGATCACGAGAAAATCCTCGAAACGGAAGCACGACATCATCCACCGCGGCTCCGGCTCGATCTCCTGTCGCTTCTGCCCGCTCAAGTTCAAGACCATAGACGCGTTTAACATCCACGCGTTCTCGCACCGCAGCAGAAAGTACAATAAGCGGCCGATTAAATGTCGGAAGTGCGGCGAGAAGTTTGTCAAGTACGGGCCTTTCATGAAGCACATGAAAAACGTGCACAAATCCACGAAGAAGATTCACTATCGTGCCATTGTGAAGCCAGAAAGATGCGTCGTTTGCGGAGGAGACTTTCCCAATCTACACAATCACTACCGCGCGCATTTACTCAACCAATGCCAGCTCTGTGGCAAGTACTTTTCGTCCTCAAGACTGTTTTCAAAACACCGCTGCGACCAGGAAGACGCCGATCCCTCTAAAGTGTTTATCTGCGACAAGAACCTCGACGCGCTCATCAACTCATACGTCCCTAAAGACTTGAAGGACGACGAGAAGTTCTACGGGGGTTCCGAAGACGAGGATGAGGAAGAACCGACTGAACCGCCAGTTGTTTCAGAGACGAAGGAACTGAAAGCGTCGATGTCTCAAGACGAGGATAGTCAGGCTGCCGACATGACATTCTCGCAGGACGAAGCCAGCCAGGAAGAGAAAGAATTCACTCAAGAGGAGCGGGAACTTCACCAGATGGTATCTTCGCCGATCATATCCGACGTGTTATCGTTGTATCAGCAGACCCAAAGCACAGAAGACCGCAAGCAGATCGTTAACGAGAAGGATATTGTCTCGCTGATCGACGACGATTCGTTGGACATGGACGTCGTCAGTATTCCTGTAATTACGATTGATTAA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNAIQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSITPPPPQNRQSSDSAFSSQTDISNQTKPSSSNESAVTPASRSRKRSRESADNTSVSSRSHDYAPATKRVSELRDSQKKRRVQNSYEDDSDYEDHMSNSQFSAGTDSDEPLLKNSFKCKKCEKSFASAKSLALHGRTHKKDSLGQNEVVNIPKPAPSEDATDDDDKLSCDKCGKTFKLKIMLKRHHDLCGVITEVSPQKELLVSLEPIDAPVHPKKIECEICTSKFKSIDNLNKHLRVVHAAAPKPDPSPVKDKKVSVPCIFCRKQFDDYYVYTAHHNSCNKRRELDAFSCPVCKRLSGKRSAFFVHVKNLHFERGLSGKEEPRAEAFDCRVCSKRLASQEQLITHLAAHMSHIDEPEAAADDESRASTLDDSASIASADYTSSKYVSNGPLKCGICDKRFTYKKALVTHHERCHANMELQVKVEPPDKMPEQCGICDKRFVYKKALVTHHERCHANMELQVKVEPPDKMPEQCGICDKRFTYKKALVTHHERCHANMELQVKVEPPDKMPEQCGICDKRFTYKKALVTHHERCHANMELQVKVEPPDKMPEQDNPNLLSETRAPSESESSDEEGDDNTCDICEKHFSYKRLLLQHKRTKHNLSSGTKRAKITLKDCSVRCLICDLEMKVSAINEHNQKHISVNIKPRNVYTCAECQDKFKSCSALAGHIKFVHRLKQPRAPKAPRALEGGSELADFCEVVVTKAEPLDALQDHNDPGAVPPSVSAAGFTCPLCTKRMPTLLALKRHVNWHTYRGKDLEKNIECAVCKETFRFQCHYKLHMRGHYRDPNLDPVHLTCPICNRKSKHLRAAQMHMNYHKQTRFNTADYQCSICKRVFQHRKVYLSHMAIHFKRGESGQNTIVGDVTPNNADKTRFDGTNTCHLCGKVCDSENSLKHHVRWHNSKSSLYGARHECQFCQLVFTNKRRLEIHIRSHYEDDNGPFKCTICGKGYIDEEYFRRHVKGHNFDHQSHKDRIDKLRKDKVKCPICARFYPDLIHLIRHLRRTHPESKMIKTDPDAPAPVYFSCKLCAKVFLDERRFQKHEEAHMRKPQFFKCKFCGKNTISMKTHNLHIKGHLTQKYLDEPLKCMHCDEKFYKGYHLHHHLRDAHQINETWIAERTEPTLSGPLKEFQCSVCLKVLASKGNFERHIDYHNTLRCNYCFDYFSTIRFLEGHLAFSCDKKKLLGDTEPHLRRIKCHVCYKAFHLQVKLDCHLQTRHGIKVNKEASSGKKEFVCDFCFRVFENEDSLTGHKVYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHNDDKEWIVMPKDSIEETCPICNKVFFNLHRHLEYHEENKCKKCNEYFYSRADYDNHLCSIESDDEEAGPSENSSLPAYEECEFCFKPITRKSSKRKHDIIHRGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFMKHMKNVHKSTKKIHYRAIVKPERCVVCGGDFPNLHNHYRAHLLNQCQLCGKYFSSSRLFSKHRCDQEDADPSKVFICDKNLDALINSYVPKDLKDDEKFYGGSEDEDEEEPTEPPVVSETKELKASMSQDEDSQAADMTFSQDEASQEEKEFTQEERELHQMVSSPIISDVLSLYQQTQSTEDRKQIVNEKDIVSLIDDDSLDMDVVSIPVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00075787;
90% Identity: iTF_01124808;
80% Identity: -