Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: -
Assembly: GCA_963855985.1
Location: OY979733.1:12328062-12343857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.012 1 10.9 1.5 1 20 129 148 129 150 0.94

2 13 0.00015 0.014 16.8 0.1 2 20 164 182 164 186 0.95

3 13 0.029 2.6 9.6 0.5 1 23 225 247 225 247 0.96

4 13 0.059 5.3 8.6 0.0 2 20 320 338 319 342 0.89

5 13 0.33 30 6.3 0.1 2 20 348 366 347 368 0.90

6 13 0.00026 0.023 16.1 1.9 1 23 376 399 376 399 0.97

7 13 1.6e-06 0.00015 23.0 2.6 1 23 420 442 420 442 0.99

8 13 4.5e-07 4.1e-05 24.7 3.0 1 23 447 469 447 469 0.99

9 13 3.2e-07 2.9e-05 25.2 2.3 3 23 482 502 480 502 0.96

10 13 3.2e-05 0.0029 18.9 3.2 1 23 508 530 508 530 0.99

11 13 9.8e-07 8.8e-05 23.7 2.5 2 23 537 558 536 558 0.96

12 13 1.6e-07 1.4e-05 26.1 1.5 1 23 564 586 564 586 0.99

13 13 0.0023 0.2 13.1 0.6 1 23 592 614 592 614 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.012	1	10.9	1.5	1	20	129	148	129	150	0.94
2	13	0.00015	0.014	16.8	0.1	2	20	164	182	164	186	0.95
3	13	0.029	2.6	9.6	0.5	1	23	225	247	225	247	0.96
4	13	0.059	5.3	8.6	0.0	2	20	320	338	319	342	0.89
5	13	0.33	30	6.3	0.1	2	20	348	366	347	368	0.90
6	13	0.00026	0.023	16.1	1.9	1	23	376	399	376	399	0.97
7	13	1.6e-06	0.00015	23.0	2.6	1	23	420	442	420	442	0.99
8	13	4.5e-07	4.1e-05	24.7	3.0	1	23	447	469	447	469	0.99
9	13	3.2e-07	2.9e-05	25.2	2.3	3	23	482	502	480	502	0.96
10	13	3.2e-05	0.0029	18.9	3.2	1	23	508	530	508	530	0.99
11	13	9.8e-07	8.8e-05	23.7	2.5	2	23	537	558	536	558	0.96
12	13	1.6e-07	1.4e-05	26.1	1.5	1	23	564	586	564	586	0.99
13	13	0.0023	0.2	13.1	0.6	1	23	592	614	592	614	0.98

Sequence Information

Coding Sequence: ATGCCGTTAGTTACTAGACCTGTCCTGCGTTCAACTGATACACTAAAACCCCAACCATGTACATCTCAGattgaaCGTTCCGATGGACTTCCTTTCACTGTATGCCAGATATGTAAAGAAAAGGCCAGCAAAGCTTTCGAATTCAGAAAACTATCCCGAGAAGCTAATACAACTCTACAGAATgtttacaaaaaagaaaaaaatgaattaTCTTATCAGGAAAATACATCATACCAGgAAACGGATCCTAACATAAAGACAGAGCAACCAACAGCAGATGATGGTGATTACGTGGATTGGATCGGACTTGACGATTTTAATGACGTAGATGCAGTGAAGGATGAGAGAGATGATATCAAATTCACCGAAAGCAGAACAGCGACGTTTCAATGTAAAAATTGCAATTTAGTTTTTCAAAGCACTAAGAAGTTGCAAGAACATACGTCcaaaaattgtttaaaagTGGAATTTGATGATACATGCAATAATTATTGCCCTCTGTGTGGTACCAGCTATCGCGATGCAGTAAACTTGACAACTCATATGTGGGAGAATCATGCTGATCTAATGGGACCGAAGAAAAGAGGAAgacctaaaaaaatattaacaacaACAATTCTTACAAAACTATCCGAAAATGGGTTTCGTTTGAAAGCTATAACCGTAGAAAAGTATGACTGTATGATTTGTAAAGAAGAATGCAATACCAAAGAAGAATTAGGTGTCCATCTTGTCAGACACAAAGATACAAAAGTTATGTGCTGTCTTCTTTGtaagaaaatgtatttaaagGCAAGACACTTCAGTCGGCATATTTGCACAGAAaaaggaaataataaaaaagaaGATGATTTGTCAACAATTGCTGgaaaaaacaaacaaagctGTGTGTCTGAAATACTTTTGGAAGAGCTACTGGAGCCAAATGGAATCACGGAAAATTGTACCTTACTTCAGGTATGTGAAATATGTAGTGGTGTGTTCACATCCGAAGAAGATTTGATGAGCCATAATGATGCAGAGCATCCCGAACGGTCGCTTAGGTGCAATCTTTGTTTGAAGGTGTTTGCTTCAATAAAATCCGCTGCTCGCCACAGAAGTATTTGTAAGCAGATCGAGAGAAAACATAAATGTACCACGTGTGGCCTGAAATTCGCCTACGAAATATCATTAAACAAACACATACTGAGATACCATGAGGGCCAAAGCGTTTCTGTAAAGTTTATGGacaccaaagctaaagacgaggaaaaacaataccagtgTGATACTTGCAGCAAACAGTTTTCAAGGAAAGAGCTGCTGGTTAAGCATACTAGAACCCATTCGGACAAGTTGTATGAATGCGATATATGCAAGAAGAAATTCAATAGAAGCGATAATTTAAGgTCACACAAAAAGACTCACGATCCGCGCGAGAAATCCAAAGCTAGCACTTGTTTGTGTTTGTACTGCGGGCGCAGCTTTAACAACTCGTCCAATCTGATCGTGCACATGCGTCGGCACACCGGCGAAAAACCATACAAGTGCGATTTTTGTGGAAAAGGGTTCCCTAGATCATCAGATCTTCAGTGCCACCGGAGGTCGCATACTGGCGAAAAACCGTGTGTTTGTCGAATATGCGGTAAAGGTTTTTCGCGAAGCAACAAGCTGTCACGGCACATGCGCGTGCACACCGGCGTGAAGCCGTACAAATGTACGTACTGCGAGAAGGCATTCTCGCAAAGTAACGATCTCACGCTGCACATCCGCCGGCATACCGGCGACAAACCGTACATCTGTGAAGTGTGCGGCGATAGGTTCATCCAAGGCACAGCATTACACAACCACAGGCGTACCCACGGGCATTACCCCCCGCCCGCGGCCGGCGCGTCGCCTGAGGCGCAAGCGCACGTCATCCGCTCCACAAACGACGCGTACGCGCTCAAGCCAACTACCCTCAGACCGGACGCAGACAGCCACGTGCTAACCACCTTCTCCGTTCAAAACATCACGCACCCACCAGCTAACCAGTAA
Protein Sequence: MPLVTRPVLRSTDTLKPQPCTSQIERSDGLPFTVCQICKEKASKAFEFRKLSREANTTLQNVYKKEKNELSYQENTSYQETDPNIKTEQPTADDGDYVDWIGLDDFNDVDAVKDERDDIKFTESRTATFQCKNCNLVFQSTKKLQEHTSKNCLKVEFDDTCNNYCPLCGTSYRDAVNLTTHMWENHADLMGPKKRGRPKKILTTTILTKLSENGFRLKAITVEKYDCMICKEECNTKEELGVHLVRHKDTKVMCCLLCKKMYLKARHFSRHICTEKGNNKKEDDLSTIAGKNKQSCVSEILLEELLEPNGITENCTLLQVCEICSGVFTSEEDLMSHNDAEHPERSLRCNLCLKVFASIKSAARHRSICKQIERKHKCTTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKAKDEEKQYQCDTCSKQFSRKELLVKHTRTHSDKLYECDICKKKFNRSDNLRSHKKTHDPREKSKASTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRICGKGFSRSNKLSRHMRVHTGVKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTALHNHRRTHGHYPPPAAGASPEAQAHVIRSTNDAYALKPTTLRPDADSHVLTTFSVQNITHPPANQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961163;
90% Identity: iTF_01124798;
80% Identity: -