Basic Information

Insect: Ostrinia furnacalis
Gene Symbol: -
Assembly: GCA_004193835.1
Location: NW:209940-222139[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0022 0.11 12.8 1.4 1 20 155 174 155 176 0.94

2 13 0.00012 0.0061 16.7 0.1 2 20 190 208 190 212 0.95

3 13 0.023 1.1 9.6 0.5 1 23 251 273 251 273 0.96

4 13 0.048 2.4 8.6 0.0 2 20 346 364 345 368 0.89

5 13 0.27 13 6.2 0.1 2 20 374 392 373 394 0.90

6 13 0.00021 0.01 16.0 1.9 1 23 402 425 402 425 0.97

7 13 1.3e-06 6.5e-05 22.9 2.6 1 23 446 468 446 468 0.99

8 13 3.6e-07 1.8e-05 24.7 3.0 1 23 473 495 473 495 0.99

9 13 2.6e-07 1.3e-05 25.2 2.3 3 23 508 528 506 528 0.96

10 13 2.6e-05 0.0013 18.9 3.2 1 23 534 556 534 556 0.99

11 13 8e-07 3.9e-05 23.6 2.5 2 23 563 584 562 584 0.96

12 13 1.3e-07 6.4e-06 26.1 1.5 1 23 590 612 590 612 0.99

13 13 0.0018 0.091 13.0 0.6 1 23 618 640 618 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0022	0.11	12.8	1.4	1	20	155	174	155	176	0.94
2	13	0.00012	0.0061	16.7	0.1	2	20	190	208	190	212	0.95
3	13	0.023	1.1	9.6	0.5	1	23	251	273	251	273	0.96
4	13	0.048	2.4	8.6	0.0	2	20	346	364	345	368	0.89
5	13	0.27	13	6.2	0.1	2	20	374	392	373	394	0.90
6	13	0.00021	0.01	16.0	1.9	1	23	402	425	402	425	0.97
7	13	1.3e-06	6.5e-05	22.9	2.6	1	23	446	468	446	468	0.99
8	13	3.6e-07	1.8e-05	24.7	3.0	1	23	473	495	473	495	0.99
9	13	2.6e-07	1.3e-05	25.2	2.3	3	23	508	528	506	528	0.96
10	13	2.6e-05	0.0013	18.9	3.2	1	23	534	556	534	556	0.99
11	13	8e-07	3.9e-05	23.6	2.5	2	23	563	584	562	584	0.96
12	13	1.3e-07	6.4e-06	26.1	1.5	1	23	590	612	590	612	0.99
13	13	0.0018	0.091	13.0	0.6	1	23	618	640	618	640	0.98

Sequence Information

Coding Sequence: ATGGCTTCATCATCAcaagtgaaaattaaaattgaagatGTATGTCGCACTTGTTTAGCCAAGGAAAGTGAATTGTTTTCGGTGTTTGATGTATCCCTTGGTGCTGTAACTCTGGACTGTGCTATAGCAGATGTTACTGGAGTTAAGattgaACGTTCCGATGGACTTCCTTTCACTGTATGCCAGATATGTAAAGAAAAGGCCAGCAAAGCTTTCGAATTCAGAAAACTATCCCGAGAAGCTAATACAACTCTACAGAAtgtttacaaaaaagaaaaaaatgaattatCTTATCAGGAAAATACATCATACCAggAAACGGATCCTAACATAAAGACAGAGCAACCAACAGCAGATGATGGTGATTACGTGGATTGGATCGGACTTGACGATTTTAATGACGTAGATGCAGTGAAGGATGAGAGAGATGATATCAAATTCACCGAAAGCAGAACAGCGACGTTTCAATGTAAAAATTGCAATTTAGTTTTTCAAAGCAGTAAGAAGTTGCAAGAACATACGTccaaaaattgtttaaaagTGGAATTTGATGATACATGCAATAATTATTGCCCTCTGTGTGGTACCAGCTATCGCGATGCAGTAAACTTGACAACTCATATGTGGGAGAATCATGCTGATCTAATGGGACCGAAGAAAAGAGGAagacctaaaaaaatattaacaacaACAATTCTTACAAAACTATCCGAAAATGGGTTTCGTTTGAAAGCTATAACCGTGGAAAAGTATGACTGTATGATTTGTAAAGAAGAATGCAATACCAAAGAAGAATTAGGTGTCCATCTTGTCAGACACAAAGATACAAAAGTTATGTGCTGTCTTCTTtgtaagaaaatgtatttaaaggCAAGACACTTCAGTCGGCATATTTGCACAgaaaaaggaaataataaaaaagaaGATGATTTGTCAACAATTGCtggaaaaaacaaacaaagctGTGTGTCTGAAATACTTTTGGAAGAGCTACTGGAGCCAAATGGAATCACGGAAAATTGTACCTTACTTCAGGTATGTGAAATATGTAGTGGTGTGTTCACATCCGAAGAAGATTTGATGAGCCATAATGATGCAGAGCATCCCGAACGGTCGCTTAGGTGCAATCTTTGTTTGAAGGTGTTTGCTTCAATAAAATCCGCTGCTCGCCACAGAAGTATTTGTAAGCAGATCGAGAGAAAACATAAATGTACCACGTGTGGCCTGAAATTCGCCTACGAAATATCATTAAACAAACACATACTGAGATACCATGAGGGCCAAAGCGTTTCTGTAAAGTTTATGGacaccaaagctaaagacgagGAAAAACAGTACCAGTGTGATACTTGCAGCAAACAGTTTTCAAGGAAAGAGTTGCTGGTTAAGCATACTAGAACCCATTCGGACAAGTTGTATGAATGCGATATATGCAAGAAGAAATTCAATAGAAGCGATAATTTAAGgtCACACAAAAAGACTCACGATCCGCGCGAGAAATCCAAAGCTAGCACTTGTTTGTGTTTGTACTGCGGCCGCAGCTTTAACAACTCGTCCAATCTGATCGTGCACATGCGTCGGCACACCGGCGAAAAACCATACAAGTGCGATTTTTGTGGAAAAGGGTTCCCTAGATCATCAGATCTTCAGTGCCACCGGAGGTCTCATACTGGCGAAAAACCGTGTGTTTGTCGAATATGCGGTAAAGGTTTCTCGCGAAGCAACAAGCTGTCACGGCACATGCGCGTGCACACCGGCGTGAAGCCGTACAAATGTACGTACTGCGAGAAGGCATTCTCGCAAAGTAACGATTTAACGCTGCACATACGCCGGCATACCGGCGACAAACCGTACATCTGTGAAGTATGCGGCGATAGGTTCATCCAAGGCACAGCATTACACAATCACAGGCGTACTCACGGGCATTACCCCCCGCCCGCGGCGGGCGCGTCGCCTGACGCGCAAGCGCACGTCATCCGCTCCACAAACGACGCGTACGCGCTCAAGCCAACCCTCAGACCGGACGCAGACAGCCACGTGCTAACCACCTTCTCCGTTCAAAACATCACGCACCCACCAGCTAACCAGTAA
Protein Sequence: MASSSQVKIKIEDVCRTCLAKESELFSVFDVSLGAVTLDCAIADVTGVKIERSDGLPFTVCQICKEKASKAFEFRKLSREANTTLQNVYKKEKNELSYQENTSYQETDPNIKTEQPTADDGDYVDWIGLDDFNDVDAVKDERDDIKFTESRTATFQCKNCNLVFQSSKKLQEHTSKNCLKVEFDDTCNNYCPLCGTSYRDAVNLTTHMWENHADLMGPKKRGRPKKILTTTILTKLSENGFRLKAITVEKYDCMICKEECNTKEELGVHLVRHKDTKVMCCLLCKKMYLKARHFSRHICTEKGNNKKEDDLSTIAGKNKQSCVSEILLEELLEPNGITENCTLLQVCEICSGVFTSEEDLMSHNDAEHPERSLRCNLCLKVFASIKSAARHRSICKQIERKHKCTTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKAKDEEKQYQCDTCSKQFSRKELLVKHTRTHSDKLYECDICKKKFNRSDNLRSHKKTHDPREKSKASTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRICGKGFSRSNKLSRHMRVHTGVKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTALHNHRRTHGHYPPPAAGASPDAQAHVIRSTNDAYALKPTLRPDADSHVLTTFSVQNITHPPANQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961163;
90% Identity: iTF_01125684;
80% Identity: -