Onub031017.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ostrinia nubilalis
Gene Symbol
-
Assembly
GCA_963855985.1
Location
OY979764.1:2926436-2929989[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.026 2.3 9.8 0.4 1 23 43 65 43 65 0.98
2 26 1 92 4.7 0.2 3 23 92 113 90 113 0.93
3 26 0.038 3.4 9.2 2.9 2 23 136 158 135 158 0.96
4 26 0.0003 0.027 15.9 3.6 3 23 166 187 165 187 0.96
5 26 0.087 7.8 8.1 1.4 1 23 219 242 219 242 0.97
6 26 0.00021 0.018 16.4 2.7 2 23 249 271 248 271 0.96
7 26 0.044 3.9 9.1 0.1 3 23 279 299 278 299 0.96
8 26 0.00012 0.01 17.2 2.6 1 23 305 328 305 328 0.94
9 26 0.0008 0.072 14.5 4.7 1 23 386 408 386 408 0.99
10 26 0.18 16 7.1 0.3 2 23 434 456 433 456 0.95
11 26 0.047 4.2 8.9 0.7 2 23 479 501 478 501 0.94
12 26 0.0025 0.23 12.9 0.0 1 23 506 529 506 529 0.95
13 26 0.3 27 6.4 2.1 1 11 534 544 534 557 0.79
14 26 0.00037 0.034 15.6 4.1 1 23 592 615 592 615 0.97
15 26 0.0057 0.52 11.8 0.6 2 23 622 643 621 643 0.96
16 26 0.00086 0.077 14.4 1.8 1 23 649 671 649 671 0.99
17 26 0.35 31 6.2 0.1 1 12 677 688 677 690 0.90
18 26 0.00029 0.026 15.9 0.5 1 23 754 776 754 776 0.98
19 26 0.042 3.8 9.1 0.1 2 23 802 824 801 824 0.96
20 26 0.041 3.7 9.1 1.0 2 23 847 869 846 869 0.95
21 26 0.044 3.9 9.1 7.6 3 23 877 897 876 897 0.97
22 26 0.014 1.3 10.6 0.6 2 23 903 925 902 925 0.95
23 26 0.51 46 5.7 1.0 1 23 929 952 929 952 0.98
24 26 0.00028 0.025 16.0 1.4 2 23 959 981 958 981 0.96
25 26 0.00034 0.031 15.7 0.4 3 23 989 1009 987 1009 0.96
26 26 0.00018 0.016 16.5 2.3 1 23 1015 1038 1015 1038 0.97

Sequence Information

Coding Sequence
ATGGAAAGCGATGTGCCAGAACTGAAGAGAGCTACAAAACAAAGCAAAATGTCCATCATGAGGCAAAATGTCTTGGAAGTGCTTCTGAAGTCGACCGTGCTCCCTTTCAGATGGCTCAAGAGTTCGTTCAGATGCTTCTACTGTTACGACGTATTTCAAGAACCCAAAGACCTTAAAGCTCACCAGATCATACATACAAGTGATGACGACAAGGTTAAAGCAATGAAAAATTATTGGGAGACCACAGTTTACGTTGACGTCTCGAATCTAGCATGCAAGCTATGTTCAACATCTATGACAGACTTCTACAAACTCATCGACCATTTGATGGAGGTGCATAACATTCAGTTTAATAAGGATATAGGGATTTGCATGAGTCCGTTTCGGCTGAACCACATTTCGGTACAATGCGTGCAATGTGACAGAGAGTGCAGAACCTTCGGCCATTTGTTGGTGCACACGAACAAGGAACATAAAGGCTGTTCACTGGTGCTTTGTGAAGTCTGCGGGCaacactttaaaaataatcaacaTTTGCGCTACCACATGAATCAAGAGCACACCAACAGGTCGGTTCTATGTCCGTTATGTGGAGAAGAAATCCTCACTGCGAATAGAATGAGAACTCACATGCAAAATGTCCACAACAAGAGGTACAAGTGTGGAATGTGCCCGGAGCTTTTTGATACGCACTACAAAAGGTCGCGTCATGTCATGATGGTGCACAAAGCTAGAGAAGAGGTGAAGTGTCAGCATTGCCCGAAAACTTTTGTGTTCAGAAGCACGATGATGAGACACGTCAGAGAAACGCATCTGCAGGAAAGAAATGCTATATGTGGGATATGTGGATGGAGAGCTTTCGGGGCAGGCAGGCTGCAAAGGCACATGATGAAACACAGCAATGAAAGAAACTTCAAGTGTCCTTCGTGCGACAAGGCGTTCAAAACCAAGAAAACTATGAAGCAGCACTACACTAATATACATGAAAAAACTCCTAGAGTTCATGATCTAATGCCTGGGAAGACGAAACGAAAACTGAAGTCTTCAAAAGTGGCGACGAGGTCTAAAGAGAGCAAACAGTTGCAACTAAGGAAATGGCTGCTTACGATCCTACAGAACACGACGGCAATGCCTTTCCGTGTGTACGGGAATAAGTACCGATGTTTCTACTGCACCTCAAGTTTCAGCCATTCGGTAGAGTTGAGAGAGCACACGAAGACCCACGAAAACGTTAACTTAGTTAAAACTATCAGAACTAGTGTCACAACCCTAGTTGCGAAACTAGATATAGCCGAAATGAGTTGCAAACTATGCTCTCAAGAATTAAAAGATTTGGGGCAGTTATTAGAACATCTACAGAATTACCACGAAGTAAAGTGTAGCCTTGAAGCGTCAGATTACATATTGTGCTTCAAATTATCAGACGAAGATCTCAGATGTTTGATATGCGATGAGAGCTTCTCATACTTTGGCCCGTTACTGCTCCACACCCATAGACTGCACAACCAAAGGCCGTACATTTGCGAAATATGCGGCGTCAGTTTTGGCGCTAAGAATGCTTTAGAAAAACACTCACAAAGCGTACATCCAACGAAGAGTTACCAGTGTCGACATTGCGAGAAAACATTCACTGCGGTCCACCGTAGGGACAACCACGAAAAACGTATCCACGATGAAAGCGAACGGAAATGCCATATCTGCTCTGAAGTTCTAGGAAGTATTTATATTAGGGACACGCATTTAGCTACAGTGCATAATATCTGGAAGTCCGAATTCAAATGTGAAGAATGTTCGCAAATGTTTAGGCACAAATATCTTCTGGTCACTCACAAAAAGAGGGTTCATTTGAAAGAGAAGAATATGACGTGTGAAGTGTGTGGAGACAAGTTCTTCGACAAACGTCTGTTGAAGTTACACATGGTGCGGCACAGCGACACCAAACCGTTCAAGTGTGAGACGTGCCAGAAGAGATTCCTAAGGAAACGGGGGCTCGAAATTCATACTAGAATACATACGAACGATAGACGATATGCTTGCAAACATTGCTCTAAGGCCTTCGTTCAAATGGCCAGAAGAAAAGGTGTTGTCAAGAAAAGGGAACGTATTTGTAAAGAAGACTATGTTCCCACGAAATCTAGAGGCACTATCAAAGAGGAAGGCCCCGGCGATCCGGACGACCGGACCAAAATAATGAGGCAAAATGTCATCCAAGTACTGAAGAATTCAACCGTGATGCCGTTCAGATGGCTTAAGAGTTCCTACCGCTGTTTCTACTGTTACGAGGTCTTCGAAGAGCCGAAAGACTTAAAAAATCACCAGGAAATCCACGCTAGCGACGACGACAAACTTAAATGCATGGAAAACTACTGGGAAACCACAGTTCACGTGGACGTTTCCAGCATATCCTGCAAACTGTGCCCAAAAACTATGAGCGACTTCTTCGAGTTGATCGACCATTTGATAACAGTCCACGAAATATCTTTCAATAAGGATATTGGGAGTTGCATGAGTCCGTACAAATTGAATAACATTTCAGTGCAATGCGCGTTCTGTAGTCAGGATTACCGGACCTTTGGCCATTTGTTGCTGCACATGAATAATGAGCATAAAGGCTTCTCCCAGCTACTATGCGACGTGTGCGGTCGGCATtgtagaaacaaaaaccacttgagAGAGCATAAGAAAGAGCACATCAACAGATCCGTCACTTGTTCTATCTGTGGAGAGACGTTGAGCAGCTACCACAAGCTCCGACCCCATATGCAAAACGTCCATGACAAGAAATACAAGTGTGCAGCGTGTCCTGAGCTATTTGAGACACATTATAAAAGATCCTTACACATGATGACGGTTCACAAGAGTCGGGAAGAGATCAAGTGCCAGTTCTGTCCGAAAACATTCGTTTTTAGGAGCACAATGATGACGCATCTAAGGATAACGCATTTGCAGGAGAAGAACACAATTTGCGGAGTGTGTGGATGGAGAACTGTAggaaaaagtaaattaaagagACACATGTCGAAGCATAGCAACGAGAAGAATTTCAAGTGTGCTGTGTGCGAAAAAGCGTTCAAAACAAAGAAGAATATGGTGCTCCACCACAGAAATGTTCATGAGAAAGAAATGCAAATGCCTCACGGATTTGGCAGCCTACCGCCGGAGATTCGACCGCCAATTGTCTAA
Protein Sequence
MESDVPELKRATKQSKMSIMRQNVLEVLLKSTVLPFRWLKSSFRCFYCYDVFQEPKDLKAHQIIHTSDDDKVKAMKNYWETTVYVDVSNLACKLCSTSMTDFYKLIDHLMEVHNIQFNKDIGICMSPFRLNHISVQCVQCDRECRTFGHLLVHTNKEHKGCSLVLCEVCGQHFKNNQHLRYHMNQEHTNRSVLCPLCGEEILTANRMRTHMQNVHNKRYKCGMCPELFDTHYKRSRHVMMVHKAREEVKCQHCPKTFVFRSTMMRHVRETHLQERNAICGICGWRAFGAGRLQRHMMKHSNERNFKCPSCDKAFKTKKTMKQHYTNIHEKTPRVHDLMPGKTKRKLKSSKVATRSKESKQLQLRKWLLTILQNTTAMPFRVYGNKYRCFYCTSSFSHSVELREHTKTHENVNLVKTIRTSVTTLVAKLDIAEMSCKLCSQELKDLGQLLEHLQNYHEVKCSLEASDYILCFKLSDEDLRCLICDESFSYFGPLLLHTHRLHNQRPYICEICGVSFGAKNALEKHSQSVHPTKSYQCRHCEKTFTAVHRRDNHEKRIHDESERKCHICSEVLGSIYIRDTHLATVHNIWKSEFKCEECSQMFRHKYLLVTHKKRVHLKEKNMTCEVCGDKFFDKRLLKLHMVRHSDTKPFKCETCQKRFLRKRGLEIHTRIHTNDRRYACKHCSKAFVQMARRKGVVKKRERICKEDYVPTKSRGTIKEEGPGDPDDRTKIMRQNVIQVLKNSTVMPFRWLKSSYRCFYCYEVFEEPKDLKNHQEIHASDDDKLKCMENYWETTVHVDVSSISCKLCPKTMSDFFELIDHLITVHEISFNKDIGSCMSPYKLNNISVQCAFCSQDYRTFGHLLLHMNNEHKGFSQLLCDVCGRHCRNKNHLREHKKEHINRSVTCSICGETLSSYHKLRPHMQNVHDKKYKCAACPELFETHYKRSLHMMTVHKSREEIKCQFCPKTFVFRSTMMTHLRITHLQEKNTICGVCGWRTVGKSKLKRHMSKHSNEKNFKCAVCEKAFKTKKNMVLHHRNVHEKEMQMPHGFGSLPPEIRPPIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00075777;
90% Identity
-
80% Identity
-