Onub009163.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- LRRFIP2_1
- Assembly
- GCA_963855985.1
- Location
- OY979739.1:1779860-1795088[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-05 0.61 10.3 0.0 20 52 1 38 1 58 0.70 2 3 2.3e-09 8.1e-05 23.0 0.0 138 231 59 151 53 157 0.92 3 3 1 3.5e+04 -7.7 19.6 1 48 161 207 161 233 0.70
Sequence Information
- Coding Sequence
- ATGCGCGAGCTGGAGCGGCCGCAGCGTGAGCAGGACCATGCCGACAAGGCCTACGACATGTACGCGGGGAAGCTGCCCGGTGAGTGCCTGACTGCCGAGCCTGCTGAGACAGCGACTGGCCTCAGCCCGGCTGCTGCTGGTTACATTAGATCATGCGCGAGCTGGAGCGGCCGCAGCCGTGAACACAAAGAAAAGTGCTCAGCCCACGAGCGGTTACGGCGCGAGCACGCGTCCCTCGAGCGGGAAGTGACGTGCGCGCGGGACGCGGTGCGCGCGCgggacgccgccgccgccgccgccggcttCGCCTTCGTGGAGGCGGGCGCCGCCGCCGACGTGCCCGGCTTCGGCGCCGTGCCGCCGCTGGCGCTCGTCTCGCATCAAGCGGACCAGATGCTAGGAGACGCTTCGGAGGGGACGCTGGTGGAGACCCTCCGACGGGGCGTGACGGAGGCGAAGGcccgcgccgcgcgcgccgaGGCCGAGGCCGCGCTGcaggccgccgccgccgcccgtcTCGAGGCCCAGCTGGCTCGGCTGCGGGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGCGAGGCGCGGGAAGCCCTCAACCGAGTCGAAGAGCTGGAGACGGAGAACAGCCACCTCACCAAGcggctggacaagctgaagaaCGCCAAGTCGGCGCTCCTCAAGGAGCTGTGA
- Protein Sequence
- MRELERPQREQDHADKAYDMYAGKLPGECLTAEPAETATGLSPAAAGYIRSCASWSGRSREHKEKCSAHERLRREHASLEREVTCARDAVRARDAAAAAAGFAFVEAGAAADVPGFGAVPPLALVSHQADQMLGDASEGTLVETLRRGVTEAKARAARAEAEAALQAAAAARLEAQLARLRARQDHQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -