Onub011481.3
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- Dsp1_2
- Assembly
- GCA_963855985.1
- Location
- OY979741.1:4973127-4984284[+]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.3e-16 5.5e-13 50.1 3.4 5 68 504 569 500 570 0.96 2 16 5.3e-19 5.5e-16 59.7 0.4 1 63 590 652 590 655 0.98 3 16 2e-06 0.0021 19.4 0.6 31 64 661 694 653 695 0.93 4 16 2.9e-05 0.03 15.7 1.0 34 63 694 723 692 726 0.94 5 16 3.3e-08 3.4e-05 25.1 0.4 28 64 734 770 728 773 0.92 6 16 6.2e-06 0.0064 17.8 3.4 34 69 770 805 768 805 0.95 7 16 0.14 1.5e+02 3.9 0.3 46 63 800 817 798 820 0.78 8 16 4.5e-08 4.6e-05 24.7 0.4 28 64 828 864 822 865 0.93 9 16 3e-05 0.031 15.6 1.0 34 63 864 893 862 896 0.94 10 16 8.1e-08 8.4e-05 23.9 0.1 28 63 904 939 898 942 0.92 11 16 0.081 84 4.6 1.2 42 62 987 1007 978 1011 0.59 12 16 4.3e-08 4.4e-05 24.7 0.4 28 64 1019 1055 1013 1056 0.93 13 16 1.4e-05 0.015 16.7 1.2 34 64 1055 1085 1053 1086 0.94 14 16 1.5e-05 0.015 16.6 1.2 34 64 1085 1115 1083 1116 0.94 15 16 3e-05 0.031 15.7 1.0 34 63 1115 1144 1113 1147 0.94 16 16 0.00043 0.45 11.9 0.0 28 52 1155 1179 1149 1180 0.90
Sequence Information
- Coding Sequence
- ATGGGGGACAGAGGCGCGACGGGGGGCGCTTGGGGTGCGCGCGACGAAGCCTCGTGGTGGCCGGGTGGCGCAGGTGAACTCCAGCACCAACAACAAATTAATGAAGAAATCGCTAGGAGTACCGCCGCAGCCACCCATCAATTATACACATACAAAATGACCGGCGGATTTTCCAATAACAGCGCAGATAATTCTACAGCTAGTTACGATTACCGATTAATTTCAAATACGAATACCAGGGAGCAATCACCTCAGCAGCCATGGTGGTATGCATCAGGCTCAGTTGAGTCTCAACAAACATCTTCTCCAACGCCTCAGAACCAGTCGAGCCCCGACCCTGATCAGGGCAGTCAGCAGTCTAACGGCATTCAGCAGAACCATCAGGTTCtccaacaacaacaacagcagcaacagcaacagcagcagcagcagcagcaacaacagcagcagcagcaacaaCAACAGCAACAACAACAGCAGCAACAACAACAGAATCAGCATACTCAACAACACACGCAGACTCTTCAGCAGACTCTGCAGCAGCAACAGCTGCAGAGCCAGCAAACTTTACAGCAGATGCTGCAACAGCATCAACAGCaacaacagcagcagcagcagcaacaacagcagcagcaacaacaacaacagcagCAACAACAGCAGCAGCAACAACAAGCCTTGCAGCAGAGTTTGCAGCAAACTCTGCAAGTCAGCCAAGCGCAGGCGCAGGCGATAGTGCAAGCGCAAGCGGTTCTGCAGCAGCAAGTCGCGCAGACGCTGCAGCAACAGCAACAGTCGCTGCATGAGCATATGCAAGCTGTCCAACAGCAGCAGATACAAGCTGCTCTACAGCGACAGTCGGCCACTTTGCAGCAGCAGCAACAACAAGCCTTGCAGCAGAGTTTGCAGCAAACTCTGCAAGTCAGCCAGGCGCAGGCGCAGGCGATAGTGCAAGCGCAAGCGGTTCTGCAGCAGCAAGTCGCGCAGACGCTGCAGCAACAGCAACAGTCGCTGCATGAGCATATGCAAGCTGTCCAACAGCAGCAGATACAAGCTGCTCTACAGCGACAGTCGGCCACTTTGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAACAGTCGCTGCATGAGCATATGCAAGCTGTCCAACAGCAGCAGATACAAGCTGCTCTACAGCGACAGTCGGCCACTTTGCAGCAGCAGCAACAACAAGCCTTGCAGCAGAGTTTGCAGCAAACTCTGCAAGTCAGCCAAGCGCAGGCGCAGGCGATAGTGCAAGCGCAAGCGGTTCTGCAGCAGCAAGTCGCGCAGACGCTGCAACAACAGCAACAGTCGCTGCATGAGCATATGCAAGCTGTCCAACAGCAGCAGATACAAGCTGCGCTACAGCGACAGTCGGCCACTTTGCAGGAGCTCCAGCAACAAGCCCAACAGCAAGCTCTTGCCCAAGGCCCAGTAACAAAGACCAGAATGCCGCGAGTGAGGCCTTACAACAAGCCTCGCGGGCGTATGACGGCGTACGCCTTCTTCGTGCAAACTTGCCGCGAGGAGCACAAGAAGAAACACCCCGATGAGAACGTCGTCTTCGCTGCCTTCTCCAAGAAGTGCGCTGAGAGGTGGAATACGATGTCCGAGAAAGAGAAAGAGCGTTTCCACGAGATGGCCGACCAAGACAAGATGCGATACGACCGCGAGATGCAGAACTACGTGCCGCCTAAGGACGTTAAAGTACGCGGGCGCAAGCGGCAAGTGAAGGACCCGAACGCGCCCAAGCGATCCTTATCAGCGTTCTTCTGGTTCTGCAACGACGAGCGTCCCAAAGTGAAGGCCAACAACCCGATGTTCACGATGGGCGACATCGCAAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCCGAGACCAAGTCCAAATATGAAGCGCTCTCTGAACAGGACAAGGCGCGGTATGATCGGTACACTGCCTTCACCTTGGGATACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGTTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAGGACAAGGCGCGGTATGATCGGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAGGACAAGGCGAGGTATGATCGGGTAAGTGATCTATCTTCAACTGCCTTCACCTTGGGAGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCGCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGAGTTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATAGGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGTAAGTGATCTATCTTCAACTGCCTTCACCTTGGGCGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCGCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGAGTTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGTAAGTGATCTAGCTTCAACTGCCTTCACCTTGGGAGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGATAAGGCGCGGTATGATCGGGTAAGTGATCTATCGTCAACATCAGATTGTAGCACACTGCTTTCACCTTGGGCGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTGAACAAGACAAGGCGCGGTATGATCGGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGTAAGTGATCTATCTTCAACTGCCTTCACCTTGGGCGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCGCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGAGTTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGAGTTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTCTGAACAAGACAAGGCGCGGTATGATCGGGTAAGTGATCTAGCTTCAACTGCCTTCACCTTGGGAGACATCGCCAAGGAGCTGGGTCGGCTGTGGGCCGCTGCTGAGCCTGAGACCAAGTCCAAATATGAAGCTCTCTGA
- Protein Sequence
- MGDRGATGGAWGARDEASWWPGGAGELQHQQQINEEIARSTAAATHQLYTYKMTGGFSNNSADNSTASYDYRLISNTNTREQSPQQPWWYASGSVESQQTSSPTPQNQSSPDPDQGSQQSNGIQQNHQVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQNQHTQQHTQTLQQTLQQQQLQSQQTLQQMLQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQALQQSLQQTLQVSQAQAQAIVQAQAVLQQQVAQTLQQQQQSLHEHMQAVQQQQIQAALQRQSATLQQQQQQALQQSLQQTLQVSQAQAQAIVQAQAVLQQQVAQTLQQQQQSLHEHMQAVQQQQIQAALQRQSATLQQQQQQQQQQQQSLHEHMQAVQQQQIQAALQRQSATLQQQQQQALQQSLQQTLQVSQAQAQAIVQAQAVLQQQVAQTLQQQQQSLHEHMQAVQQQQIQAALQRQSATLQELQQQAQQQALAQGPVTKTRMPRVRPYNKPRGRMTAYAFFVQTCREEHKKKHPDENVVFAAFSKKCAERWNTMSEKEKERFHEMADQDKMRYDREMQNYVPPKDVKVRGRKRQVKDPNAPKRSLSAFFWFCNDERPKVKANNPMFTMGDIAKELGRLWAAAEPETKSKYEALSEQDKARYDRYTAFTLGYIAKELGRLWAVAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRVSDLSSTAFTLGDIAKELGRLWAAAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRTKSKYEALSEQDKARYDRVSDLSSTAFTLGDIAKELGRLWAAAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRVSDLASTAFTLGDIAKELGRLWAAAEPETKSKYEALSEQDKARYDRVSDLSSTSDCSTLLSPWATSPRSWVGCGPLLSLRPSPNMKLSEQDKARYDRTKSKYEALSEQDKARYDRVSDLSSTAFTLGDIAKELGRLWAAAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRELGRLWAAAEPETKSKYEALSEQDKARYDRVSDLASTAFTLGDIAKELGRLWAAAEPETKSKYEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01125248;
- 90% Identity
- -
- 80% Identity
- -