Onub002735.1
Basic Information
- Insect
- Ostrinia nubilalis
- Gene Symbol
- Unr
- Assembly
- GCA_963855985.1
- Location
- OY979733.1:27706661-27730070[+]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.6e-16 3.2e-12 47.1 0.0 2 65 109 171 108 172 0.95 2 9 0.00022 1.9 9.3 0.0 16 58 202 244 190 252 0.78 3 9 1.1e-18 9.7e-15 55.1 0.3 2 65 262 321 261 322 0.96 4 9 0.025 2.3e+02 2.7 0.0 40 64 386 412 377 414 0.84 5 9 9e-12 7.9e-08 33.0 0.3 2 51 427 473 426 480 0.96 6 9 0.12 1.1e+03 0.5 0.0 42 63 560 583 530 586 0.76 7 9 1.9e-14 1.7e-10 41.6 0.1 2 55 609 659 608 665 0.90 8 9 0.44 3.9e+03 -1.3 0.0 40 53 736 749 727 758 0.79 9 9 6e-13 5.3e-09 36.8 0.0 3 65 765 827 763 828 0.90
Sequence Information
- Coding Sequence
- ATGTCCAGTAATCCTCAGTGGAAAATGTTCCAACCGCCAGATTCCCACCCGTCTCCCCTGCAGGATATACTAGACCTCCAGCACTCAAACATGCAGGCAAAACAGGCCTACCGCAATGGCACCTTCAGCAGTGAGTACCCCAGCTCACCCAGGGACAACTTTAGCAACATGAGTAAGACGGGTGGTGGCAACCGATTCCCTCTCGGCAACTACAACCTGGATGGGTGCCCCATGGGTGACTCCGTCGGAGTATACTCATCTTCTGGCTCTACCAACAACTCCTCATCTCAATATGACTCCATGAACCACCCCCCTATAAGAGAGACAGGAATCATTGAAAAACTATTGCATTCATATGGATTCATACAGTGCTGTGAGAGGCAAGCGCGCTTGTTTTTTCACTTTAGTCAATTCAGTGGAAATATTGAACATCTTAAAATCGGAGACCCTGTGGAATTTGAAATGACATATGACCGGCGCACTGGGAAACCCATCGCATCCACAGTCACTAAGATTGCTCCTGAAGTGGTGCTGAGCGAAGCTCGCGTCACCGGTACGGTCACGACTGAGGTGAAAGGTGAAGGATCTGGAGATAATACAGGGAGAATTTCATATGAGAACCGCGGTGAATGTTTTTTCTTACCGTACACAAAAGATGATGTTGAGGGTAATGTGACATTACGCACTGGTGATGCCGTGAGCTTCCAGATAGCTACTAACCAAAGgggAACTCTGGGCGCCTGCCACGTAAGGTTTGAAAATCCCGTTCATCCAGTCAAGTATCATGGCGTTGTCTGTTCTATGAAAGAAAATTTTGGATTCATTGAAAGAGCGGACGTGGTGAAAGAAATATTCTTTCATTATTCTGAAACTAAAACTAAGGAAGATTTAACTCTCGGAGATGACGTCGAGTTTATCATCCAGACCAGAAACGGCAAGGAGGTGGCGTGCAACATCACCAAGCTGCCCGGCGGCTCGGTGGTGTTCGAGGACGTCAGCCCCGAGGTCATGCGCGGCCAGGTGCTGAAGCCGCTGGAGCgcggcgccgcgcgcgcgccgcagaACGACCCGCTGCCCGGCCGCatccgctaccgcgccgccgaCCACTCGGAGGTCGAGGTGCCGTTCGGCGACAAGGACCAGTGCGGCGAGTTCACGCTGCGGCACGGCGACTGGGTGCAGTTCCAGGTGGCCACGGACCGGCGCGACCAGCTCAAGCGCGCCACCAACATCTCGCTGCTCGACGAGTCCTTCAACGTCTCCGGCGAGCGGCGCGAGCAGGGCGTGGTGTGCTCGCTGCGCGAGGGCTTCGGCTTCATCCGCTGCGTGGAGCGCGACCAGACCATGTTCTTCCACTTCGCGGAGGTGCTGCGCCTCGGCCACGAGCTCTCCGTGGGCGACGAGGTGGAGTTCACCGTGGACCCGGTGAGCTCGTTCTCGAACATGAGCTCGCGGCAGTCGGCCATCCGCATCAAGCACCTGCCGGCGGGCTCCGTGAGCTTCGAGGCGCTGCTGGAGCGCGGCGTGCGCGGCGTGGTGACGCGCGAGCCGCCGCCCGCCAGCCCCACGCACTCGCACGAGCCCCAGGAATCCAACGGACTGATCACGTGTCAGATCAACGGAGCCAAGAAGTCCATCCCGTTCTCCGCCAAGAAGTGCGAGTCCAAGATGAGCCCGCGCCTCGGCGACAAGGTCGTGTTCGACGTCTACCAGGTGAAGCGCAGCAAGGAGCTGGTGGCGCAGGGCGTGGCGGTGGCCGTGGcgccgggcgcggcgggcgcgggcgcgggcgcgcctCCCAACGGCGCCGGCCGCCCGCTGGTCTACGGCTTCATCGCCGCGCTCAAGGACGGCTTCGGCTTCATCGAGACCGCCGACCACACCAAGGAAGTCTTCTTCCACTTCAGCAACCTGGACGGGTCGCCGGACGCGCTGGAGCCGGGCGCCGAGGTGGAGTACAGCGTGGGGCGCGGCGGCGTggggggcgcgggcggcggcggctgcgccaGCGCCGAGTGGGTGCGCGCGCTGCCGCGGGGCTCCGTGCCGCTGGCCGCGCCGCTCGAGCCCACGCTGCACGGCACCGTCACGCGCACGCTGCGCGCGCTCAACCCCGACCAGCAGCACTACTCAGGCATGATCCAGGCGGACGGGTCGGGCGCGGCGTACGAGTTCGGCATCACGGGGCTGGCGTGCAAGCGCGAGATCCTGCAGGTCGGCGACCCCGTGACGTTCCAGGCCGACGCCGACGGCCGCGCCGCCAACATCGTGCCCGTGCGCAAGAAGCGCCGCGCCACGGTCGATGCCATCAAAGGCGGGTTCGGCTTCCTGTCGGTGGAGGGCGAGGACTGCCGGCGGCTGTTCTTCCACATGTCGGAGGTGCGCGGCAACCCGTCCGAGCTGGCGCCCGGCGACACCGTGGAGTTCGTCATGCTCACCAACCCGCGCAACGGCAAGTCCTCCGCCTGCAACGTCGTCAAAGTCGCCAAGACCGCGGGCAAGACGCGCGGCGAGCGGCCGGAGCGGCTGCTGGCGCGCCTGCGCACGGCGTCGCTGGAGGAGGCGGCCGGGCCGCGCGTCGTGGTGCTGCGCGCGCCGCGCGGGCCCGACGGCGGCCGCGGCttccgcccgcgccgcccgctcGCCGTAAGCTCAGATGCCGACATCAAGGCTAGCTTGCTCTCGTCCGCGACTACAGGACGGCCACTAGCCGGCACGACTGATTCGCAAGTCGGTGTTGCCGTGGTGAACTGGTAG
- Protein Sequence
- MSSNPQWKMFQPPDSHPSPLQDILDLQHSNMQAKQAYRNGTFSSEYPSSPRDNFSNMSKTGGGNRFPLGNYNLDGCPMGDSVGVYSSSGSTNNSSSQYDSMNHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGTLGACHVRFENPVHPVKYHGVVCSMKENFGFIERADVVKEIFFHYSETKTKEDLTLGDDVEFIIQTRNGKEVACNITKLPGGSVVFEDVSPEVMRGQVLKPLERGAARAPQNDPLPGRIRYRAADHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRATNISLLDESFNVSGERREQGVVCSLREGFGFIRCVERDQTMFFHFAEVLRLGHELSVGDEVEFTVDPVSSFSNMSSRQSAIRIKHLPAGSVSFEALLERGVRGVVTREPPPASPTHSHEPQESNGLITCQINGAKKSIPFSAKKCESKMSPRLGDKVVFDVYQVKRSKELVAQGVAVAVAPGAAGAGAGAPPNGAGRPLVYGFIAALKDGFGFIETADHTKEVFFHFSNLDGSPDALEPGAEVEYSVGRGGVGGAGGGGCASAEWVRALPRGSVPLAAPLEPTLHGTVTRTLRALNPDQQHYSGMIQADGSGAAYEFGITGLACKREILQVGDPVTFQADADGRAANIVPVRKKRRATVDAIKGGFGFLSVEGEDCRRLFFHMSEVRGNPSELAPGDTVEFVMLTNPRNGKSSACNVVKVAKTAGKTRGERPERLLARLRTASLEEAAGPRVVVLRAPRGPDGGRGFRPRRPLAVSSDADIKASLLSSATTGRPLAGTTDSQVGVAVVNW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236412;
- 90% Identity
- -
- 80% Identity
- -