Basic Information

Insect: Ostrinia nubilalis
Gene Symbol: Arid2_1
Assembly: GCA_963855985.1
Location: OY979753.1:10713825-10754723[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.2e-07 0.0015 20.0 0.0 2 53 283 338 282 345 0.88

2 3 1.7e-05 0.12 13.9 0.0 16 53 348 386 341 392 0.88

3 3 5.8e-08 0.00041 21.9 0.0 16 78 396 461 390 462 0.83

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.2e-07	0.0015	20.0	2	53	283	338	282	345	0.88
2	3	1.7e-05	0.12	13.9	16	53	348	386	341	392	0.88
3	3	5.8e-08	0.00041	21.9	16	78	396	461	390	462	0.83

Sequence Information

Coding Sequence: ATGCTAGAAGACTGGGTGACCGAGCCGTCCGAAGAGAAGCAGCTTTTCGCACCGGTACTACCAGGCGGCGCTATGTGTGTTTACACACAGCGGGTGCTACAGATCGCTTCGATCGTCCGCTCGCTGTCCTTCCACGAGGAGAACGTGCAGTATCTGGCGAGAAATACTACTCTGATAAGATTCCTGCTCCTCTGTGCCAACTGCTGGGTTGGCTCTCTGAGGCAATCTGGACTGGACACTCTTGGGAATGTCTCTACAGAACTCGTAATAAAGGATCCAGCGACGTGTCTAATATCACGTCACGTGTTGTCGACTATACAATCGGCGCTAGTTTCGCCGGACCGTGCAAGAGTGCTCGCCGCTTTGGAGCTGCTGAACAAACTCGCGCAGAACGAGGTCAATGAGGACGCTTTGCTGAAGGCTTTGGAGGCCAAGGTGTACAGCGACGTGTGCTCGCTACTCACGCTGCGAGACATCATGGTGTTAGTGTGTACGCTGGAATGCGTGTACGCTCTGACGTCACTCGGCGACCGGGCGAGCGAGGCGGTCGCTAGAGTACCAGGTCTTGTCCACACTCTGGTCTCGCTGGTCACTGTCGAGGCTCAAAGCTACGGGCCGCGTGCGTGCATCCTCATGCGCGTAGTTGAAACGGTGAGCGGACCGagcgcgctcgccgccgccgccgagcgaGACGCAGACAGGCACCCGCAGCACCAGGCTCAACCGCAGCCGAAGCAGCCAGAGCCGGCGCCTgtgcccgccgcgcccgcgcccgccgcctccCCCGCGCCCGTTAACTCGCTACAGCAGTCGCACATGCAGCAGCGGACTGTACAGGAAAACGAGCACTTCGTCCAAGCGTGGCTCCGTTCCACATACGAGCCGCTACCGCCGAGCGACAACACTGCGTGCGAAGCGGCCGAGCTGTACCGGCAGTACCTGGCGTGCTGCGGCAAGCTGGGCAGGAAGGGGGTCATCGCGCCCGCACACTTCCCCCGGCTAGTGAGGTCAGTGACCCGCCCGGGGCACACAGCAGCGAGCGACCACAGCGCGTGCGAGGCGGCCGAGCTGTACCGGCAGTACCTGGCGTGCTGCGGCAAGCTGGGCAGGAAGGGGGTCATCGCGCCCGCACACTTCCCCCGGCTAGTGAGGTCAGTGACCCGCCCGGGGCACACAGCAGCGAGCGACCACAGCGCGTGCGAGGCGGCCGAGCTGTACCGGCAGTACCTGGCGTGCTGCGGCAAGCTGGGCAGGAAGGGGGTCATCGCGCCCGCACACTTCCCCCGGCTAGTGAGGACTGTGTTTGGAGGAACAGTGGGCCCGAATAACGTGACCACCTCGACGGGAGAGACTCAGCAATGTTACATCGGGATTCGGTCAAGAAATCCACCGCCTAGGACCAATCCACCGGCTGGTCCAGCGTCGCCAATACTCAAAGCGCAGTTAACGAACAAACCCACGGGCACAGCTGAAGTGAAGCAAATAGTTGCCACACCACAGCCACAAGCCCAACAACCAGCTCCGACGCACCCACATCTCTCCCAAGCGCTGGAATCGAACCCGTCCAACACGACCCTCATCAAACACCTGCTCGCCCACAAAGTAAGCCCCGCCCCGCCGCCGCAAGTTGCGCAGAGACAACAAAGTCAGCAGAGAGTGACCCCTGCAGCTAACACAGTTGTAGTTCAGAATAATCAGGTATTGGATGTAGACCCAGAAGCCCTTATCAAGTGCACGACCATCACACCAGGTGGCGTCGCGAGTAGCACACCACCTGCTGAAAAGGTTTATATTAACGCTGCAGATGATTCTTTGGTCATAAAAGAGGAACCAGTACAAATTCAAATCGACGAGCAAACGCAGTTGACAATCAAAACGGCTCAGAACAAAATGCTCGCCGACTTGCTAGAGAAGAAATCTAACCCTCCAGTGCAAGTTGTCCAAATGGGGCCCCAACTGAACGCTCCAACTATACAAATAACCGAAACCGGCCAGATAGTGCAAGTGAAGACGGAAAACGAACCAGTATTACAACTAAACGACCCTATGGTCCCTCAGACTAATCAATTCTTCCAAATAAAGAACGATCAAGGTCAATTGATCCAACTCAAGAACGACCAAGGTCAATTGATCCAGCTCAAGAACGATCAAGGTCAACTGATCCAGATAAAGAACGAACAGGGTCAGATTATACAATTGAAGAGTGACCAACTACCGGGAGCCATGTTGCAGTTCAAGAATGACCAAGGTCATATAGTCCAGGTCAAAAATGATGCACAGATAAATCTGCAGAGCGGTCAGATTATACAGCAAGCTGTGATGCAAGCACTGAAGACTGAAAAGGACATGATTGTGGACACCGTCGTCACCGACCACTCGTATACGGAACCGCCGACCAAAAAGATCAAGCTTGAAGACAAGAAAGATGGTAACACCGAAAGCGTTTCGAAGACAGCGGCAAATCTTTATGCTGCTCTCGCTGCATCTGCTCTTGAAGATGAAGACTTGATACCTCCAAAAACTGAACCAGATATCCCACAATCTGTTTTAGTAGCAGGCACTGGAGAGAATGCCTCTCTCATTATCCAGGAACCCATTTTACAGGTGCAGCAACCATCGCTGCAAGTGCAGCAACCGACGATGCAAGTGCAACAACCGACATTGCAAGTGCAACAACCGACACTGCAAGTGCAACAACCAACATTGCAGGTGCAGCAACCGACACTGCAGGTTCAACAACCAATGTTGCAGGTACAACCGATGGACGTCCAAAACATCATCGCATCGCAATCTGGACAAATCATCCTGCAAGaaaaatcCATGCCATCACAACAACCGCAGTTTGTCCAGCAACCGATGCAGATTATCGCTACACCAGGTGGCTCGCAAgGAGGTTTGAGCTACATAACTCAAAACTTGCAAGGCAACATACAGATGCAGAAAACTATCATCATAGTACAAGGCCCTGCTGGTGGAGGTCCCTTAACTTTAACGGTGAACAACCCCGGGGGCCTGGACGAAGCGACGTTAAACAGCCTTATTACCCAGGCGACAGAGGCTATAACGCAACAGCAAATAATACAGAACTCGGGCGTGATACAGACCGCTCAGAGGGTGATTGTGAGCCAGCCGACCCTTGTGAGCACGTCCCAACCGATCACTGTGGTCAAAACGGCCATAGCTCAGAACACCCCCCAAATAACGCCAAGTCAGCAACCAATAATAACCACGCAACCGCAACCACACAAGGCGCAAATCGTCAACCAGCCTCAAGGTCAGCAGATAGTGGTTACACAGAAACAACCACCAGCGCTGATCAGTACCACATCTAGCAACCAAATAGGGAACCAGCAGATCATACAAGGCGGTCAGCAAATTATACAGGGCAACCAACAACTGATTCAAGGTGGTCAGCAAATTATAACTGGCAACCAACAGATTATACAGGGGAATCAGCAGTTGTTACAGGGTAACCAGCAAATCATAGCTGTCTCCAACAACCAGCAGATCATAGTAAATGCTCCGATGAAGCCAGGGGTCCATAGAGTGGTCCAACAACCTCAGAGGAGCCAAGTGGTGACCAACGTGCAGCCGACCATAGTGCAGACTTCGGTTGTGCAGAGCGATACCAAAACCAGTGTTATACAGACTAGTGCgCAGAAACCGCAGCAAGTGATGAGACAAGTCATCACCAGGCAGCCAGTCATGGTGGGAAACACCAAGATCGGCGAAAAAGAGATGGTTGTCACGCAGCCTGTTACCGAGGTACCAAAGCCTCCTACGCCGAAGCCTACagcgacgccgccgccgcaaaCGCAAAGTTTGCCGGCGCCTTTACAGCCTAATCAGCAGGACGACACGCCCTGGATATGCCATTGGCGAGGCTGTGGAAAGTCATTCGCAAACGCAGCAGAAGTGTTCTCGCACGCGGCTCGTGTCCACTGCCCGACCAACGCAGCGGGCGAAGCGCCCTGTCTTTGGTTAGACTGCGACCGGGTGCCGCGCCGGACTTTTGCACTGCTCAACCATCTTACTGACAAACACTGCAGTGAGCATGCATTAAAAGCGATATTCAACGCGCGAAGGCACACAGCTGCGGATTCGGACAGCAACAAGCCAGTTTCTCTCGGCGGCTACCCGCCGAATGCGGCGCTAGCGGCACTCAACAAACACGCTACAGATATGTTCAACCCGAGAGAGCTCATGGATGAGAATGAGGGTCCAGTGACGAAGAGCATACGGTTGACTGCGGCTCTCATATTGAGGAATATCGTCATTTACTCCAACACAGGAAGGCGcCAACTCCGTTCATACGAGGCCCATCTAGCGTCCATAGCTCTCAGCAACGTGGAAGCATCGCGGACGATCGCCCAAGTATTATACGACATGCACAATATTTGA
Protein Sequence: MLEDWVTEPSEEKQLFAPVLPGGAMCVYTQRVLQIASIVRSLSFHEENVQYLARNTTLIRFLLLCANCWVGSLRQSGLDTLGNVSTELVIKDPATCLISRHVLSTIQSALVSPDRARVLAALELLNKLAQNEVNEDALLKALEAKVYSDVCSLLTLRDIMVLVCTLECVYALTSLGDRASEAVARVPGLVHTLVSLVTVEAQSYGPRACILMRVVETVSGPSALAAAAERDADRHPQHQAQPQPKQPEPAPVPAAPAPAASPAPVNSLQQSHMQQRTVQENEHFVQAWLRSTYEPLPPSDNTACEAAELYRQYLACCGKLGRKGVIAPAHFPRLVRSVTRPGHTAASDHSACEAAELYRQYLACCGKLGRKGVIAPAHFPRLVRSVTRPGHTAASDHSACEAAELYRQYLACCGKLGRKGVIAPAHFPRLVRTVFGGTVGPNNVTTSTGETQQCYIGIRSRNPPPRTNPPAGPASPILKAQLTNKPTGTAEVKQIVATPQPQAQQPAPTHPHLSQALESNPSNTTLIKHLLAHKVSPAPPPQVAQRQQSQQRVTPAANTVVVQNNQVLDVDPEALIKCTTITPGGVASSTPPAEKVYINAADDSLVIKEEPVQIQIDEQTQLTIKTAQNKMLADLLEKKSNPPVQVVQMGPQLNAPTIQITETGQIVQVKTENEPVLQLNDPMVPQTNQFFQIKNDQGQLIQLKNDQGQLIQLKNDQGQLIQIKNEQGQIIQLKSDQLPGAMLQFKNDQGHIVQVKNDAQINLQSGQIIQQAVMQALKTEKDMIVDTVVTDHSYTEPPTKKIKLEDKKDGNTESVSKTAANLYAALAASALEDEDLIPPKTEPDIPQSVLVAGTGENASLIIQEPILQVQQPSLQVQQPTMQVQQPTLQVQQPTLQVQQPTLQVQQPTLQVQQPMLQVQPMDVQNIIASQSGQIILQEKSMPSQQPQFVQQPMQIIATPGGSQGGLSYITQNLQGNIQMQKTIIIVQGPAGGGPLTLTVNNPGGLDEATLNSLITQATEAITQQQIIQNSGVIQTAQRVIVSQPTLVSTSQPITVVKTAIAQNTPQITPSQQPIITTQPQPHKAQIVNQPQGQQIVVTQKQPPALISTTSSNQIGNQQIIQGGQQIIQGNQQLIQGGQQIITGNQQIIQGNQQLLQGNQQIIAVSNNQQIIVNAPMKPGVHRVVQQPQRSQVVTNVQPTIVQTSVVQSDTKTSVIQTSAQKPQQVMRQVITRQPVMVGNTKIGEKEMVVTQPVTEVPKPPTPKPTATPPPQTQSLPAPLQPNQQDDTPWICHWRGCGKSFANAAEVFSHAARVHCPTNAAGEAPCLWLDCDRVPRRTFALLNHLTDKHCSEHALKAIFNARRHTAADSDSNKPVSLGGYPPNAALAALNKHATDMFNPRELMDENEGPVTKSIRLTAALILRNIVIYSNTGRRQLRSYEAHLASIALSNVEASRTIAQVLYDMHNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01282004;
90% Identity: -
80% Identity: -