Oere007268.1
Basic Information
- Insect
- Osmoderma eremita
- Gene Symbol
- -
- Assembly
- GCA_031763485.1
- Location
- JARFOC010000546.1:1898188-1904411[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.5 8e+04 -3.9 0.1 26 30 121 125 117 137 0.77 2 5 0.021 4.9e+02 3.2 0.1 22 54 173 205 168 205 0.88 3 5 0.00028 6.5 9.2 0.0 21 46 228 253 220 259 0.90 4 5 6.1e-05 1.4 11.4 0.2 24 44 287 307 278 314 0.84 5 5 0.00051 12 8.4 0.1 22 49 313 340 309 344 0.86
Sequence Information
- Coding Sequence
- ATGCAGAATATATGCCCACAGTGTAATAGTACGTTGAAGAGTCCTTCATGCAGATTAATTCAAGATGCTTGTGgtcattataaatgcaggttaTGCTTATTAAGAGATGAAGAAAATTGCAGTTTGTGTGTTACCAAAAACAAACCAGAGGATACAGGCAATCATAGTTCcgttattaaatatgaaaacagCCATACAGCAGTGATTACATATAAAAGTAGTAACGACATCAATGGAAATACAAATGATGAAAAAAGTGATGATGTTAAACATGATACTGTGGAATTGAACAAACGTTTTTACCAAACATTACCTATTCCCAACCATATATCAGCAAGTAATGATGTTCCCATTGTTTACACTTGTAAAATATGTGGTAGGCAATTCAAGACTAGGTCGCACATAAAATATCATCAATACTGTGCTAGTGGTAAGAAGCCCCTGCAATGCACATATTGCCCAAAGGAATTTATTACTAAAGCTCATTTGGAACTTCACATTTTAAGTCATAGCGGTAGAAAACCTCATTCATGTGATTCCTGTGGAAAATCCTTTTTGCAAAAAGCTAAATTGAACAGGCACATGTTATTACATTCAAACTTGAAACCGTGTGTGTGCCAGAGATGTGGAAAATCGTTCAGGACAAACGATAAGCTAAAAGTGCATTCTTTGatacatacaaaagaaaaaccattTGCTTGCAAAGAGTGCAAGGCAAAATTTAACAATTCCtcaaatttaaagaaacatttagCAGTCCATATAAAAGAGGGCGTCCACATGTGTGATCAATGCGGCAAACGTTTTAAATTAAGATCAACCTTAATGACACATCGTAAAATTcactcaaacaataaatctcATAAATGTCCAATTTGTACGAAAGCCTTCCATAGCTCTAAGGATTTGCGAAGACACACCCTGATACATGCagATGAGAAAGCATATAACTGCGATATGTGCAACACATCTTTTCGACGTAAGGACAATCTAAATAGGCATTTGAGAAATACGCATCCCGGAAAGAAGGCCACGTATACGcataaaattgtgaaaacacTCTTAGCAAAGCCATCAGTGGTTGAAAGTCCAAATGCCATAAAAGTAATAACACCCTCACCTACCTGTAACGTAGTTAGGAAACAAGAAACTGTCGAGCGTGACCAAAGAACTGTGCCTGTAATTAATGGTCCAATCAAATTAGCTTCAAAAACTTCCGCGTTTAAGGACTGCTATAATATCAATAGaaaCCCATCCGAAACAAGTGAAAGCGtcaatatttacgaaaaaattcttttgccAAATAATGTACCCAAAGTCGGCGACATCCAAACCGTTAGAAAACCACCCGACATCTTGAAGAATGATTTCCTACCCCTACATTACGGAACATCATTCGAGCATAAAACACATGcagtcattaaaaatataaaattcaaattacccAAGGAATATTTAAACCTATCTAATAGAGACGATTCTAATAATTCACTACAAAACAAGGAGTTGAAAATTAATTCTGCAAGGCAACAGGGAAGTTTAGAGCCGCAAAGTGAGGTAAAAAGTGTTATTGTGAATGCAACAAGCAGCCAAACAACGGACGTTCATTGGAGAAAGCGAACCACACAGAATTTTAATGCTAGTCATATTGAGAgtgaattgtaa
- Protein Sequence
- MQNICPQCNSTLKSPSCRLIQDACGHYKCRLCLLRDEENCSLCVTKNKPEDTGNHSSVIKYENSHTAVITYKSSNDINGNTNDEKSDDVKHDTVELNKRFYQTLPIPNHISASNDVPIVYTCKICGRQFKTRSHIKYHQYCASGKKPLQCTYCPKEFITKAHLELHILSHSGRKPHSCDSCGKSFLQKAKLNRHMLLHSNLKPCVCQRCGKSFRTNDKLKVHSLIHTKEKPFACKECKAKFNNSSNLKKHLAVHIKEGVHMCDQCGKRFKLRSTLMTHRKIHSNNKSHKCPICTKAFHSSKDLRRHTLIHADEKAYNCDMCNTSFRRKDNLNRHLRNTHPGKKATYTHKIVKTLLAKPSVVESPNAIKVITPSPTCNVVRKQETVERDQRTVPVINGPIKLASKTSAFKDCYNINRNPSETSESVNIYEKILLPNNVPKVGDIQTVRKPPDILKNDFLPLHYGTSFEHKTHAVIKNIKFKLPKEYLNLSNRDDSNNSLQNKELKINSARQQGSLEPQSEVKSVIVNATSSQTTDVHWRKRTTQNFNASHIESEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308313; iTF_01124058; iTF_00308507;
- 90% Identity
- iTF_01124058;
- 80% Identity
- iTF_01124058;