Basic Information

Insect: Osmia lignaria
Gene Symbol: stc_1
Assembly: GCA_012274295.1
Location: NW:57630-64494[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 9.9e+03 -4.4 1.6 15 19 556 560 555 560 0.81

2 14 0.07 3.5e+02 0.5 0.2 4 10 589 595 588 596 0.95

3 14 9.4e-07 0.0046 16.1 14.5 3 19 604 620 603 620 0.91

4 14 2.2e-06 0.011 14.9 17.4 1 18 656 673 656 674 0.97

5 14 9.2e-06 0.046 12.9 14.0 1 19 712 730 712 730 0.96

6 14 1.2e-05 0.06 12.6 12.8 4 18 777 791 770 792 0.86

7 14 1.6 7.9e+03 -3.8 2.0 5 10 821 826 821 826 0.93

8 14 0.00059 2.9 7.2 8.4 1 11 832 842 832 843 0.97

9 14 1.2 5.8e+03 -3.4 0.7 4 10 847 853 846 853 0.87

10 14 2e-10 9.8e-07 27.9 13.8 1 19 859 877 859 877 0.98

11 14 1.8 9.1e+03 -4.0 0.5 6 10 906 910 905 910 0.80

12 14 2 9.9e+03 -7.5 10.4 10 19 924 934 913 934 0.71

13 14 2.4e-07 0.0012 18.0 13.7 1 16 970 985 970 996 0.86

14 14 8.7e-06 0.043 13.0 14.2 1 19 1002 1021 1002 1021 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	9.9e+03	-4.4	1.6	15	19	556	560	555	560	0.81
2	14	0.07	3.5e+02	0.5	0.2	4	10	589	595	588	596	0.95
3	14	9.4e-07	0.0046	16.1	14.5	3	19	604	620	603	620	0.91
4	14	2.2e-06	0.011	14.9	17.4	1	18	656	673	656	674	0.97
5	14	9.2e-06	0.046	12.9	14.0	1	19	712	730	712	730	0.96
6	14	1.2e-05	0.06	12.6	12.8	4	18	777	791	770	792	0.86
7	14	1.6	7.9e+03	-3.8	2.0	5	10	821	826	821	826	0.93
8	14	0.00059	2.9	7.2	8.4	1	11	832	842	832	843	0.97
9	14	1.2	5.8e+03	-3.4	0.7	4	10	847	853	846	853	0.87
10	14	2e-10	9.8e-07	27.9	13.8	1	19	859	877	859	877	0.98
11	14	1.8	9.1e+03	-4.0	0.5	6	10	906	910	905	910	0.80
12	14	2	9.9e+03	-7.5	10.4	10	19	924	934	913	934	0.71
13	14	2.4e-07	0.0012	18.0	13.7	1	16	970	985	970	996	0.86
14	14	8.7e-06	0.043	13.0	14.2	1	19	1002	1021	1002	1021	0.97

Sequence Information

Coding Sequence: ATGGCCACATGGGATGGTTCTGATTCTAAACCAGacgatcaaaattattatacatattttaatgaaaatattactgGTACTGCAGCAGGAACCTGGACATTCTTtcctaataatgtaaataatgagTATATACCAGCTAATCGCGAATATTATGTACAAAATGAACCTTTATTTGAGCATAATGACCCAAATACTTCCTATCGTACGAACACAGATGGTTGGTCAATGTCATCTGTAGCCAGTATTTATCAGAAACATGTAATGAGTATAGTAGATAACGCTGAAATGTCAGGCAATCAAAAATGCTTTACAAGTACTATTAAACCTCAACAAAGTTTTGCATCTAATAACCATTGGAAGGATGATTAcaatttagaaacaattgaaaCTAAACATAATTTGatagaaagaataaagaaaacagGTAATTCGAATCTTCATGTTACGGCTGAAGAGTTTGTGCCAAATAACAGAGAATTGGATGATAAAAGATttagattacaaaatacaagGTCTATCAATACTACGGATGCTTCTATTAAAGATAGTAGCGAAACATTAGACaaacatacattttataataatagtagacacgaaagaaaatacaatactAGGAGAAACTCAAATTATAAACCTAAAGAAGGACAACAGGATAATCAATTTCATAAAcgaaatacatataaaaattcgTATCAACAAGGAAAAGTCTCCAATAAATTTCAAGGTAATAAATGTTTTACtaacaaatattattcagaTAAATCACAGGCAGATGTAAAAGGTATAGATGAGAATGTATTAGATAAGGATACAATGAATAATACAGATGCCTCTAGTAGTAAAGAATTTTATGCAAcaagtttaaataaaagtgaatTATTATCGagtatggaaataaatttgaataacaataaaagagCATTAAACAAGAGGAGTGGTGAAAGTAGTACCGTTAGAGATGAAGGTTTACAAGAAAATGATACAAAGCATTGTAATAATCAGGTTAAGGAATTCGCTTACTATGGTTCTGGTTCAAAGCAATTCCATAATAATCGCAGAAACACAAAGAAGTATCcgtacaatattaaatacaacagagaagaaaataattttaaagaaaagagaCGGAATTATCAAGGATATAGTAGAGAAAATTTTAGTAAAGAGCATAAATCTAAAGTAAAGGAGCAAATGTGTAGAAACGGAGAACATAACGAGCTTCGAGAATGTTGTAGAGACGAAATGGGACTTGAaacaaaggaaataaaagaaaagaaatataattaccaaGGGTTTAATGAATCAAAAGAATATAACaaggaaaacaaaaatgaaatttttaaagaaaaagatagaaataaagGTTCtgtatttgttgaaaataatgaaaaaggaaatgaacATTGGAATAACAAAAGAGAAAGCAGCGAAAGAAATAGTGTTCAAAAAtggggaaaaaataaaaaatcttatGTTGatGACGACGCCAATCAAAGGGAGAGATTAGCGGATCAACTAAGTAGGGGGCAATTAGAATGTTTAGTATGTTGTGAATACATTAAACAGAATGATTATATTTGGTCATGCTCTAATTGTTACCACGTTCTACATTTAaagtgtattaaaaaatgggCAAAATCGTCGCAAGTAGAAAATGGTTGGAGATGTCCAGCGTGTCAAAATATGAGCGAAACGATTCCTGAAAACTGTTACTGTTTTTGTGGCAAGACAAAAGCACCTGAATGGAATCGTAGGGATGTTGCACATTCTTGCGGTGAAGTTTGTGGTAGACTACTATCAAAAAATTGTACTCACAAATGTACGCTTCTCTGTCATCCAGGCTCTTGTCCACCGTGTACAGCAATGGTAACAAAGTATTGTGGTTGCGGTAAAACATTGCAAACAGTCCAGTGCAGCGGCCATAAATTATTGCTCTGTGATTCTATATGTGATAAAGTCTTAAATTGTGGTAAGCACAAATGTGAAAGACAATGCCACCACGGAGAAtgtgaaaattgtaataaaacagTAACGCAAAtatgTTATTGCGGTAAAAATACAAGAGATGTAACGTGTCAGAGCAATATTTCGCTTACATATTCTTGCGAGACTACTTGTGGTAAATTATTAGATTGTGGTAATCATACTTGTACAAAGTTATGCCATGCTGATGCTTGCGAGTGTTGTTCTTTAACTCCGGAAAAAATTACAACTTGTTGTTGCGGACAGACGCCATTAACAGAAATAAGACAAACTTGCTTAGACCCAGTTCCAGTATGTGATAAAGTTTGTTCCAAAAAACTAAAGTGTGGACAACCTAGTAATCCTCATAGCTGTAAAGCAAAATGTCATCAAGGGGATTGCCCTAACTGCGACTTAACTACCGATGTTAAGTGTCGTTGCGGAAATATGGACAGAGAAATAGCTTGTAAAGATTTAACATCGAAAGCTGATGACGCTCGATGTGAGAAGAAGTGCACAAAAAAACGATCTTGCGGAAAGCATAAATGTAATCAGTTATGTTGTATAGAAATAGAACATGTCTGTCCATTGGTGTGTTCTAAAACCTTAAGTTGCGGTAGACATAAATGTGAACAAAGTTGTCATAAAGggAGATGTCAACCTTGTTGGCACAGTAGTTTTGATGAATTATACTGTGAATGCGGAGCTGCTGTTATATATCCTCCTGTTCCTTGCGGTACGAGAAGACCTGCTTGCGATAGGCCCTGTTCTCGTCAACACTCTTGCGGCCACGAAGTACTACATAATTGTCACAGTGAACCAACCTGCCCTCCTTGCACTGTTCTTACTCAGAGATGGTGTCACGGTAAACACGAACTTCGAAAAGCTGTTCCATGTTATGTTACTGAAATTTCATGTGGTTTACCATGTAATAAACCTATATCGTGCGGTCGGCATAAATGTATCAGTACTTGTCATACGGGCCCATGTGAAAAACCAGGACAACAATGTATTCAACCTTGCACTACTCCAAGGGAAATGTGCGGACATGTTTGTGCAGCTCCCTGTCATGAGGGTAAATGCCCAGACACTCCGTGTAAGGAGATGGTAAAGGTGACATGTCAATGTGGACATAGATCTATGTCCCGTGTGTGTGCTGAAAATTCTAAAGAATATCAGAGAATAGCAAGCAGTATATTAGCTAGTAAAATGACTGATATGCAGTTGGGTCATTCTATTAATTTGGACCAAGTATTCGGCCAAGGTGCAAAGAAGCAAAATCAGTTGAAAACTTTAGAGTGCAACGATGAATGTAAAACGATAGAACGTAATAGAAAACTGGCGCTAGGTTTGCAAATAGTGAATCCAGATTTAAGCGGAAAATTAATGCCTAAATATAGTGATTTCATGAAACAGTGGGCTAAGAAAAATCCGCAGTTTTGTCAAATGGTTCATGATAAATTAACCGAATTGGTTCAATTAGCGAAAACTTCCAAACAGAAGTCTCGTAGTTATTCTTTTGATTGTATGAACAAAGATAAGCGTCATTTTGTTCATGAATCCTGTGAACATTTTGGCTGTGAAAGTCAAGCGTATGATCAAGAACCAAAAAGAAATGTCGTAGCTACTGCTGTAAAGGATAAGTGTTGGTTACCGAGCTATAGTTTATTAGAAATCGTGCAGCGAGAAAATGGTCAAAGAAAAGTTCCAGGTCCGATGCTGAATACCTTAAAAACCGATGGACCTGTAAAgACAATATTATCACTGCCTACACAGAGGAGccaaaaaacagaaatacaGTCAACCGCGAAGACAGCTGAACCAGAAATAGATTACTTTGATTATCAtggttaa
Protein Sequence: MATWDGSDSKPDDQNYYTYFNENITGTAAGTWTFFPNNVNNEYIPANREYYVQNEPLFEHNDPNTSYRTNTDGWSMSSVASIYQKHVMSIVDNAEMSGNQKCFTSTIKPQQSFASNNHWKDDYNLETIETKHNLIERIKKTGNSNLHVTAEEFVPNNRELDDKRFRLQNTRSINTTDASIKDSSETLDKHTFYNNSRHERKYNTRRNSNYKPKEGQQDNQFHKRNTYKNSYQQGKVSNKFQGNKCFTNKYYSDKSQADVKGIDENVLDKDTMNNTDASSSKEFYATSLNKSELLSSMEINLNNNKRALNKRSGESSTVRDEGLQENDTKHCNNQVKEFAYYGSGSKQFHNNRRNTKKYPYNIKYNREENNFKEKRRNYQGYSRENFSKEHKSKVKEQMCRNGEHNELRECCRDEMGLETKEIKEKKYNYQGFNESKEYNKENKNEIFKEKDRNKGSVFVENNEKGNEHWNNKRESSERNSVQKWGKNKKSYVDDDANQRERLADQLSRGQLECLVCCEYIKQNDYIWSCSNCYHVLHLKCIKKWAKSSQVENGWRCPACQNMSETIPENCYCFCGKTKAPEWNRRDVAHSCGEVCGRLLSKNCTHKCTLLCHPGSCPPCTAMVTKYCGCGKTLQTVQCSGHKLLLCDSICDKVLNCGKHKCERQCHHGECENCNKTVTQICYCGKNTRDVTCQSNISLTYSCETTCGKLLDCGNHTCTKLCHADACECCSLTPEKITTCCCGQTPLTEIRQTCLDPVPVCDKVCSKKLKCGQPSNPHSCKAKCHQGDCPNCDLTTDVKCRCGNMDREIACKDLTSKADDARCEKKCTKKRSCGKHKCNQLCCIEIEHVCPLVCSKTLSCGRHKCEQSCHKGRCQPCWHSSFDELYCECGAAVIYPPVPCGTRRPACDRPCSRQHSCGHEVLHNCHSEPTCPPCTVLTQRWCHGKHELRKAVPCYVTEISCGLPCNKPISCGRHKCISTCHTGPCEKPGQQCIQPCTTPREMCGHVCAAPCHEGKCPDTPCKEMVKVTCQCGHRSMSRVCAENSKEYQRIASSILASKMTDMQLGHSINLDQVFGQGAKKQNQLKTLECNDECKTIERNRKLALGLQIVNPDLSGKLMPKYSDFMKQWAKKNPQFCQMVHDKLTELVQLAKTSKQKSRSYSFDCMNKDKRHFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPMLNTLKTDGPVKTILSLPTQRSQKTEIQSTAKTAEPEIDYFDYHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01122771;
90% Identity: iTF_01122771;
80% Identity: -