Basic Information

Insect: Osmia lignaria
Gene Symbol: -
Assembly: GCA_012274295.1
Location: NW:1181082-1188825[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0095 0.66 9.7 0.3 3 23 482 504 481 504 0.94

2 10 0.0013 0.091 12.4 1.4 1 23 510 534 510 534 0.98

3 10 0.00023 0.016 14.8 0.8 1 23 540 564 540 564 0.96

4 10 0.00081 0.056 13.1 0.3 3 23 572 594 571 594 0.91

5 10 0.0027 0.19 11.5 3.9 1 21 601 623 601 625 0.95

6 10 8.2e-05 0.0057 16.2 0.5 2 23 633 656 632 656 0.95

7 10 1.9e-05 0.0014 18.2 1.8 1 23 662 686 662 686 0.93

8 10 6.1e-05 0.0042 16.6 0.4 1 23 692 716 692 716 0.93

9 10 4.7e-05 0.0033 17.0 0.8 1 23 722 744 722 744 0.99

10 10 3e-05 0.0021 17.6 1.1 1 23 833 858 833 858 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0095	0.66	9.7	0.3	3	23	482	504	481	504	0.94
2	10	0.0013	0.091	12.4	1.4	1	23	510	534	510	534	0.98
3	10	0.00023	0.016	14.8	0.8	1	23	540	564	540	564	0.96
4	10	0.00081	0.056	13.1	0.3	3	23	572	594	571	594	0.91
5	10	0.0027	0.19	11.5	3.9	1	21	601	623	601	625	0.95
6	10	8.2e-05	0.0057	16.2	0.5	2	23	633	656	632	656	0.95
7	10	1.9e-05	0.0014	18.2	1.8	1	23	662	686	662	686	0.93
8	10	6.1e-05	0.0042	16.6	0.4	1	23	692	716	692	716	0.93
9	10	4.7e-05	0.0033	17.0	0.8	1	23	722	744	722	744	0.99
10	10	3e-05	0.0021	17.6	1.1	1	23	833	858	833	858	0.96

Sequence Information

Coding Sequence: ATGTCTCGTAAAGGAACTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGAATATTTCGTAATCGACGAGGTTTGTGTTCGGTTCGAGGTTGGACGCACGGAGAAGTCGGAGTCGTAGGCGGTTCGGCAGGTTACAGTCAGTCGGGCCTGTTGCCCGCTTCGCCGGATGACGAGGAAAGGAAggcaacaaataaaaaagaaaaacacaaaGGAAAAATCAACGACGAAATCGTAGAAACGACTGAGAAAGTGTGGATCAGGGATAAACAAGTGACAAACGTTGTTTCAAACGAACCGAACGTTGAAGCGATCGGTAAAACTGCCGATGTCGAGACTGTAGCCGACATCGAGAAATGGTTAAAAACGCGAACGGAATCCGTGTCGAGCATGGATCTCGACGCGATCAAATCCGGGGTCGAGGAGGGCGTCGACCGGTACCTGGGCGAGGAACTCCAGCACGCTTTTCTGGAAAAGGACCCTGACGGACTGTCGATCGACATAGATCTGTCCGACAAGAAACTAAGTTTAGGTTATGATCCCTTACTTCAGGAGCTTCAGCACGAGAAACTGCTCGATGCCTGCGAGAAAGATGGTTTCATGCTGCCGGAGTTCCAACTGGATCATTTAGATCCATTAGCTTTGTCTCCGGACGATATGATGGTTGCCGGTGAAATTTTACCGTCGACCAGTGCTCAACCTACTTTAAGTATCCCTAATGGGGATGCTGAAGGAATTTGTCCGGAAACAGAGCAATCTTctttaataaagaaatctaTTGTTGTAGAAAATCAAGAATCGCATGCTAAATCTCCAGTTCTTGTTGATGATTTGCATGATATTAACAGTTTGAACAAAGAGGAAGATATGCAGCTCCAAAAGAGTAGCGATTTATCAGAAAGCGCTGCTACTCTTTATGCAGAGGATTTTAATACAGAACCAGAAGAGGAGGGATTAGGAAATGCGAAATTAGTTTCAGATCCCTCTGAAAATGCTATAATTGAACagttaaaaacaaaaagtaaaGCAAAGTTAGAGCCAAGAATTATcaaaaagcgaaagaaaatgTCTGAAAACGGAGAGAAGAAGTTAGAGAATGAGATTACAATGTCGGGAGAAGATGTTATAGATACTAAGGACGGTGTAATGGCTGTTGTAGCTATATCGAcggataaaatttcaaatatgacGCAGATTGTCATAAACACCGGTACAGAGGAACAGATATACCAAGGAAAAACCTCTGAGTTGATAGAAGCTACAGGAAACTTTCCAAAATTGCCAAAGTTAGAAACTTCGACCGCATGGAACGGTACGATGGAACATAACGTAGAGAATCCCAGCAATCAGCACGAAATGGTGATATCTAATGCGTTAGAAGAGTTAGGTATTACGGATGATAATTTACAACCAGTATCGGTTAACGAACAGGGAAAAGTGTGGCTCTGTCCACGGGATGATTGTAAGAGGCAATTTAGTAAACTTTATGCTTTGAAAGGTCACCTACTAGCACATTATGGTGTGAGACCTTTTAAGtgCGACTTTGAAGGATGTACTTGGGCATTTTATTCGGAGTTCAAACTTAAGCGGCATAAAGAGACGCATTTAAAGCGCAAAGACTATATTTGCAAGCGAGAGGGCTGTAATCGTCGATTTactacaatttataatttatggaGCCACGAGAAATTGCACAGTCGTCCAAATAGGATATTATGCCAAGTACCAGACTGCCAGGAAAAGTTTCAAACGAAAAGAGCCCTCGAGTTACATATGAAGTCTCATGACCAAAGTCATGCCCCGTATGTTTGCAAGCACGAGGGATGCGGAAAGAGATACTACAGTAGCAATGCATTGACGTCGCATCAAAGATGCCATAGTTATAAGGAAATAGATGTAAAGTGTTCGTGGCCAGGCTGCGGTAAGGTGTTTGATAAACCTTGTAGACTGAAAGCACACCTGCGTTCGCACACCGGCTGCAAGCCTTACCTTTGTACATTTCAAGGCTGCCAGTGGGCTTTCTCGTCTTCTAGCAAATTGAAGAGACATCAAAAGAAGCACACCAACGAGCGCAAGTTCGTTTGCGACGTTCCTGCCTGTGGAAAAGCATTTATGAGATCCGAGCATCTGAAGGAGCATAGATTAACACACAAAGAGGGAAGATACTTTCAGTGTTTAATATGTAACGCTAAGTTTTCTGCAAAAAGTAGCCTGTACGTTCATATAAAGAAGCATCAAATTAAGGAAGGTGTCGAGACAAAGTTAAACGATACGGTTAACGGTCAGAAACGTACTAAGGTAAAGGAGACGCAATGTTCCAGGGTAAACCCGGTTGTGAAATCGAAAAGGAAGTCAATAGATCTGAACGTAAATATACCTTGTCTAGACTCGTCTACGGTAACAGTGAAAGCTGAATGTATCGATGAAAATGTGAAAAGTAACAATGAGAATCAAACTAAGGATACTTTAGTGCCTCCTCAAGATGAACCTAAAACTTTATACCACTGTCCAGTTGAGACATGTACACGTTCGTACACTACGAAAGCAACGTTAAGGGCACATATGTTGAAAATACACGGTACCCCTGTTGAAGATTGTGATAAATCGTCGAAAAGAATACCCGCGAGTCCTGTTTGTAATATGGACTACATTTTGTACACTACTCCTTCTGTATCTGAACCTACAGAGCAAATGATAATGGTAGCACCTTACGACGCGGTGATTCTTAGTACTGCTTCAGAAATAGATCACTCGCTTCCTGAACCAGAACCACCGCCCtttaataatgtattaaaattgacTGAACCTTCTTCGCATGTTGTCACCCGTAAACAAATATCTGATCAACATGTACGAAAAGATCAGGGTTCAGCAAGGACTGATTTAACGTTTTCTGATGTATGGAAATTGAAAGCGAACGGTGCTGTGTTCGATTCTGTTGTTGGAGCGTCTGATGTTGTGTTAGGTGCGAATGATTTAGAGGAAGGAAGTTTATTACTAACCGAGGAATTACCTTCGATGTATTATCACGATGACGTAGCAGGGACTGAATATCAGGTACTGCTACTTGATTCAATACCATCTGAAAGTACTATAAACCTAAGGGGActtgaataa
Protein Sequence: MSRKGTPSACKSKQIPRIFRNRRGLCSVRGWTHGEVGVVGGSAGYSQSGLLPASPDDEERKATNKKEKHKGKINDEIVETTEKVWIRDKQVTNVVSNEPNVEAIGKTADVETVADIEKWLKTRTESVSSMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLSLGYDPLLQELQHEKLLDACEKDGFMLPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPTLSIPNGDAEGICPETEQSSLIKKSIVVENQESHAKSPVLVDDLHDINSLNKEEDMQLQKSSDLSESAATLYAEDFNTEPEEEGLGNAKLVSDPSENAIIEQLKTKSKAKLEPRIIKKRKKMSENGEKKLENEITMSGEDVIDTKDGVMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPKLETSTAWNGTMEHNVENPSNQHEMVISNALEELGITDDNLQPVSVNEQGKVWLCPRDDCKRQFSKLYALKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYICKREGCNRRFTTIYNLWSHEKLHSRPNRILCQVPDCQEKFQTKRALELHMKSHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEIDVKCSWPGCGKVFDKPCRLKAHLRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDVPACGKAFMRSEHLKEHRLTHKEGRYFQCLICNAKFSAKSSLYVHIKKHQIKEGVETKLNDTVNGQKRTKVKETQCSRVNPVVKSKRKSIDLNVNIPCLDSSTVTVKAECIDENVKSNNENQTKDTLVPPQDEPKTLYHCPVETCTRSYTTKATLRAHMLKIHGTPVEDCDKSSKRIPASPVCNMDYILYTTPSVSEPTEQMIMVAPYDAVILSTASEIDHSLPEPEPPPFNNVLKLTEPSSHVVTRKQISDQHVRKDQGSARTDLTFSDVWKLKANGAVFDSVVGASDVVLGANDLEEGSLLLTEELPSMYYHDDVAGTEYQVLLLDSIPSESTINLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761152;
90% Identity: iTF_00962023;
80% Identity: -